Gene : AT3G55170 A. thaliana TAIR10
Defline:  (1 of 4) K02918 - large subunit ribosomal protein L35e (RP-L35e, RPL35) Genomic Order:  4560
Name:  ? AT3G55170 Secondary Identifier:  ? PAC:19660800
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G55170 0.5kb upstream 0.5kb upstream 1933 true Chr3: 20452910-20454842 Arabidopsis thaliana
AT3G55170 0.5kb upstream 0.5kb upstream 500 false Chr3: 20454343-20454842 Arabidopsis thaliana
AT3G55170 0.5kb downstream 0.5kb downstream 1933 true Chr3: 20452410-20454342 Arabidopsis thaliana
AT3G55170 0.5kb downstream 0.5kb downstream 500 false Chr3: 20452410-20452909 Arabidopsis thaliana
AT3G55170 1.0kb upstream 1.0kb upstream 2433 true Chr3: 20452910-20455342 Arabidopsis thaliana
AT3G55170 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20454343-20455342 Arabidopsis thaliana
AT3G55170 1.0kb downstream 1.0kb downstream 2433 true Chr3: 20451910-20454342 Arabidopsis thaliana
AT3G55170 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20451910-20452909 Arabidopsis thaliana
AT3G55170 2.0kb upstream 2.0kb upstream 3433 true Chr3: 20452910-20456342 Arabidopsis thaliana
AT3G55170 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20454343-20456342 Arabidopsis thaliana
AT3G55170 2.0kb downstream 2.0kb downstream 3433 true Chr3: 20450910-20454342 Arabidopsis thaliana
AT3G55170 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20450910-20452909 Arabidopsis thaliana
AT3G55170 5.0kb upstream 5.0kb upstream 6433 true Chr3: 20452910-20459342 Arabidopsis thaliana
AT3G55170 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20454343-20459342 Arabidopsis thaliana
AT3G55170 5.0kb downstream 5.0kb downstream 6433 true Chr3: 20447910-20454342 Arabidopsis thaliana
AT3G55170 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20447910-20452909 Arabidopsis thaliana
AT3G55170 10.0kb upstream 10.0kb upstream 11433 true Chr3: 20452910-20464342 Arabidopsis thaliana
AT3G55170 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20454343-20464342 Arabidopsis thaliana
AT3G55170 10.0kb downstream 10.0kb downstream 11433 true Chr3: 20442910-20454342 Arabidopsis thaliana
AT3G55170 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20442910-20452909 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121494282 5273 Angiosperm Singleton cluster - no MSA
122329900 5261 Brassicaceae Singleton cluster - no MSA
123771182 5264 Brassicales-Malvales Singleton cluster - no MSA
124269714 5266 SBM Singleton cluster - no MSA
124125838 5268 Malvidae Singleton cluster - no MSA
123854786 5270 Rosid Singleton cluster - no MSA
123440791 5271 Pentapetalae Singleton cluster - no MSA
122476376 5272 Eudicot Singleton cluster - no MSA
120767651 5274 Embryophyte Singleton cluster - no MSA
123426654 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.082        
cufflinks 14.207        
cufflinks 7.774        
cufflinks 12.909        
cufflinks 6.893       Low
cufflinks 14.633       High

0 Strain