Gene : AT3G55020 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22957//PTHR22957:SF269 - TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN // RABGAP/TBC DOMAIN-CONTAINING PROTEIN Genomic Order:  4545
Name:  ? AT3G55020 Secondary Identifier:  ? PAC:19664321
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G55020 0.5kb upstream 0.5kb upstream 6543 true Chr3: 20388869-20395411 Arabidopsis thaliana
AT3G55020 0.5kb upstream 0.5kb upstream 500 false Chr3: 20394912-20395411 Arabidopsis thaliana
AT3G55020 0.5kb downstream 0.5kb downstream 6543 true Chr3: 20388369-20394911 Arabidopsis thaliana
AT3G55020 0.5kb downstream 0.5kb downstream 500 false Chr3: 20388369-20388868 Arabidopsis thaliana
AT3G55020 1.0kb upstream 1.0kb upstream 7043 true Chr3: 20388869-20395911 Arabidopsis thaliana
AT3G55020 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20394912-20395911 Arabidopsis thaliana
AT3G55020 1.0kb downstream 1.0kb downstream 7043 true Chr3: 20387869-20394911 Arabidopsis thaliana
AT3G55020 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20387869-20388868 Arabidopsis thaliana
AT3G55020 2.0kb upstream 2.0kb upstream 8043 true Chr3: 20388869-20396911 Arabidopsis thaliana
AT3G55020 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20394912-20396911 Arabidopsis thaliana
AT3G55020 2.0kb downstream 2.0kb downstream 8043 true Chr3: 20386869-20394911 Arabidopsis thaliana
AT3G55020 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20386869-20388868 Arabidopsis thaliana
AT3G55020 5.0kb upstream 5.0kb upstream 11043 true Chr3: 20388869-20399911 Arabidopsis thaliana
AT3G55020 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20394912-20399911 Arabidopsis thaliana
AT3G55020 5.0kb downstream 5.0kb downstream 11043 true Chr3: 20383869-20394911 Arabidopsis thaliana
AT3G55020 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20383869-20388868 Arabidopsis thaliana
AT3G55020 10.0kb upstream 10.0kb upstream 16043 true Chr3: 20388869-20404911 Arabidopsis thaliana
AT3G55020 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20394912-20404911 Arabidopsis thaliana
AT3G55020 10.0kb downstream 10.0kb downstream 16043 true Chr3: 20378869-20394911 Arabidopsis thaliana
AT3G55020 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20378869-20388868 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367929 5261 Brassicaceae View MSA
123834893 5264 Brassicales-Malvales View MSA
124343165 5266 SBM View MSA
124239001 5268 Malvidae View MSA
124063524 5270 Rosid View MSA
123740176 5271 Pentapetalae View MSA
122795755 5272 Eudicot View MSA
122044400 5273 Angiosperm View MSA
121345248 5274 Embryophyte View MSA
123428184 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.668        
cufflinks 31.099     High High
cufflinks 14.373        
cufflinks 26.269        
cufflinks 14.193        
cufflinks 27.959        

0 Strain