Gene : AT3G55180 A. thaliana TAIR10
Defline:  (1 of 5) PTHR11614:SF92 - ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN-RELATED Genomic Order:  4561
Name:  ? AT3G55180 Secondary Identifier:  ? PAC:19659936
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7420 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G55180 0.5kb upstream 0.5kb upstream 2280 true Chr3: 20454403-20456682 Arabidopsis thaliana
AT3G55180 0.5kb upstream 0.5kb upstream 500 false Chr3: 20454403-20454902 Arabidopsis thaliana
AT3G55180 0.5kb downstream 0.5kb downstream 2280 true Chr3: 20454903-20457182 Arabidopsis thaliana
AT3G55180 0.5kb downstream 0.5kb downstream 500 false Chr3: 20456683-20457182 Arabidopsis thaliana
AT3G55180 1.0kb upstream 1.0kb upstream 2780 true Chr3: 20453903-20456682 Arabidopsis thaliana
AT3G55180 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20453903-20454902 Arabidopsis thaliana
AT3G55180 1.0kb downstream 1.0kb downstream 2780 true Chr3: 20454903-20457682 Arabidopsis thaliana
AT3G55180 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20456683-20457682 Arabidopsis thaliana
AT3G55180 2.0kb upstream 2.0kb upstream 3780 true Chr3: 20452903-20456682 Arabidopsis thaliana
AT3G55180 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20452903-20454902 Arabidopsis thaliana
AT3G55180 2.0kb downstream 2.0kb downstream 3780 true Chr3: 20454903-20458682 Arabidopsis thaliana
AT3G55180 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20456683-20458682 Arabidopsis thaliana
AT3G55180 5.0kb upstream 5.0kb upstream 6780 true Chr3: 20449903-20456682 Arabidopsis thaliana
AT3G55180 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20449903-20454902 Arabidopsis thaliana
AT3G55180 5.0kb downstream 5.0kb downstream 6780 true Chr3: 20454903-20461682 Arabidopsis thaliana
AT3G55180 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20456683-20461682 Arabidopsis thaliana
AT3G55180 10.0kb upstream 10.0kb upstream 11780 true Chr3: 20444903-20456682 Arabidopsis thaliana
AT3G55180 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20444903-20454902 Arabidopsis thaliana
AT3G55180 10.0kb downstream 10.0kb downstream 11780 true Chr3: 20454903-20466682 Arabidopsis thaliana
AT3G55180 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20456683-20466682 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374566 5261 Brassicaceae View MSA
123800778 5264 Brassicales-Malvales View MSA
124298149 5266 SBM View MSA
124149866 5268 Malvidae View MSA
124061404 5270 Rosid View MSA
123753493 5271 Pentapetalae View MSA
122796454 5272 Eudicot View MSA
122051494 5273 Angiosperm View MSA
121350082 5274 Embryophyte View MSA
123428617 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low Low
cufflinks 0.161     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.252     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.105     Low  

0 Strain