Gene : LHCA1 A. thaliana TAIR10
Primary Identifier:  ? AT3G54890 Defline:  (1 of 1) K08907 - light-harvesting complex I chlorophyll a/b binding protein 1 (LHCA1)
Genomic Order:  4530 Name:  ? AT3G54890
Secondary Identifier:  ? PAC:19662845
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54890 0.5kb upstream 0.5kb upstream 2100 true Chr3: 20339504-20341603 Arabidopsis thaliana
AT3G54890 0.5kb upstream 0.5kb upstream 500 false Chr3: 20341104-20341603 Arabidopsis thaliana
AT3G54890 0.5kb downstream 0.5kb downstream 2100 true Chr3: 20339004-20341103 Arabidopsis thaliana
AT3G54890 0.5kb downstream 0.5kb downstream 500 false Chr3: 20339004-20339503 Arabidopsis thaliana
AT3G54890 1.0kb upstream 1.0kb upstream 2600 true Chr3: 20339504-20342103 Arabidopsis thaliana
AT3G54890 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20341104-20342103 Arabidopsis thaliana
AT3G54890 1.0kb downstream 1.0kb downstream 2600 true Chr3: 20338504-20341103 Arabidopsis thaliana
AT3G54890 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20338504-20339503 Arabidopsis thaliana
AT3G54890 2.0kb upstream 2.0kb upstream 3600 true Chr3: 20339504-20343103 Arabidopsis thaliana
AT3G54890 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20341104-20343103 Arabidopsis thaliana
AT3G54890 2.0kb downstream 2.0kb downstream 3600 true Chr3: 20337504-20341103 Arabidopsis thaliana
AT3G54890 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20337504-20339503 Arabidopsis thaliana
AT3G54890 5.0kb upstream 5.0kb upstream 6600 true Chr3: 20339504-20346103 Arabidopsis thaliana
AT3G54890 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20341104-20346103 Arabidopsis thaliana
AT3G54890 5.0kb downstream 5.0kb downstream 6600 true Chr3: 20334504-20341103 Arabidopsis thaliana
AT3G54890 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20334504-20339503 Arabidopsis thaliana
AT3G54890 10.0kb upstream 10.0kb upstream 11600 true Chr3: 20339504-20351103 Arabidopsis thaliana
AT3G54890 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20341104-20351103 Arabidopsis thaliana
AT3G54890 10.0kb downstream 10.0kb downstream 11600 true Chr3: 20329504-20341103 Arabidopsis thaliana
AT3G54890 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20329504-20339503 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374272 5261 Brassicaceae View MSA
123840113 5264 Brassicales-Malvales View MSA
124341032 5266 SBM View MSA
124253562 5268 Malvidae View MSA
124067443 5270 Rosid View MSA
123742778 5271 Pentapetalae View MSA
122793443 5272 Eudicot View MSA
122044861 5273 Angiosperm View MSA
121344658 5274 Embryophyte View MSA
123424228 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 200.151     High  
cufflinks 2.913        
cufflinks 471.419     High  
cufflinks 2.867        
cufflinks 536.288     High High
cufflinks 1.706       Low

0 Strain