Gene : PUB14 A. thaliana TAIR10
Primary Identifier:  ? AT3G54850 Defline:  (1 of 1) PTHR23315//PTHR23315:SF111 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 14
Genomic Order:  4526 Name:  ? AT3G54850
Secondary Identifier:  ? PAC:19658444
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54850 0.5kb upstream 0.5kb upstream 3099 true Chr3: 20320922-20324020 Arabidopsis thaliana
AT3G54850 0.5kb upstream 0.5kb upstream 500 false Chr3: 20320922-20321421 Arabidopsis thaliana
AT3G54850 0.5kb downstream 0.5kb downstream 3099 true Chr3: 20321422-20324520 Arabidopsis thaliana
AT3G54850 0.5kb downstream 0.5kb downstream 500 false Chr3: 20324021-20324520 Arabidopsis thaliana
AT3G54850 1.0kb upstream 1.0kb upstream 3599 true Chr3: 20320422-20324020 Arabidopsis thaliana
AT3G54850 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20320422-20321421 Arabidopsis thaliana
AT3G54850 1.0kb downstream 1.0kb downstream 3599 true Chr3: 20321422-20325020 Arabidopsis thaliana
AT3G54850 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20324021-20325020 Arabidopsis thaliana
AT3G54850 2.0kb upstream 2.0kb upstream 4599 true Chr3: 20319422-20324020 Arabidopsis thaliana
AT3G54850 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20319422-20321421 Arabidopsis thaliana
AT3G54850 2.0kb downstream 2.0kb downstream 4599 true Chr3: 20321422-20326020 Arabidopsis thaliana
AT3G54850 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20324021-20326020 Arabidopsis thaliana
AT3G54850 5.0kb upstream 5.0kb upstream 7599 true Chr3: 20316422-20324020 Arabidopsis thaliana
AT3G54850 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20316422-20321421 Arabidopsis thaliana
AT3G54850 5.0kb downstream 5.0kb downstream 7599 true Chr3: 20321422-20329020 Arabidopsis thaliana
AT3G54850 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20324021-20329020 Arabidopsis thaliana
AT3G54850 10.0kb upstream 10.0kb upstream 12599 true Chr3: 20311422-20324020 Arabidopsis thaliana
AT3G54850 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20311422-20321421 Arabidopsis thaliana
AT3G54850 10.0kb downstream 10.0kb downstream 12599 true Chr3: 20321422-20334020 Arabidopsis thaliana
AT3G54850 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20324021-20334020 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363065 5261 Brassicaceae View MSA
123830304 5264 Brassicales-Malvales View MSA
124337480 5266 SBM View MSA
124237370 5268 Malvidae View MSA
124065418 5270 Rosid View MSA
123739906 5271 Pentapetalae View MSA
122790994 5272 Eudicot View MSA
122042286 5273 Angiosperm View MSA
121349135 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.101       High
cufflinks 11.366        
cufflinks 8.537       Low
cufflinks 11.958        
cufflinks 10.394        
cufflinks 10.461        

0 Strain