Gene : AT3G54830 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22950//PTHR22950:SF240 - AMINO ACID TRANSPORTER // TRANSMEMBRANE AMINO ACID TRANSPORTER-RELATED Genomic Order:  4524
Name:  ? AT3G54830 Secondary Identifier:  ? PAC:19658518
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54830 0.5kb upstream 0.5kb upstream 3630 true Chr3: 20311901-20315530 Arabidopsis thaliana
AT3G54830 0.5kb upstream 0.5kb upstream 500 false Chr3: 20315031-20315530 Arabidopsis thaliana
AT3G54830 0.5kb downstream 0.5kb downstream 3630 true Chr3: 20311401-20315030 Arabidopsis thaliana
AT3G54830 0.5kb downstream 0.5kb downstream 500 false Chr3: 20311401-20311900 Arabidopsis thaliana
AT3G54830 1.0kb upstream 1.0kb upstream 4130 true Chr3: 20311901-20316030 Arabidopsis thaliana
AT3G54830 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20315031-20316030 Arabidopsis thaliana
AT3G54830 1.0kb downstream 1.0kb downstream 4130 true Chr3: 20310901-20315030 Arabidopsis thaliana
AT3G54830 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20310901-20311900 Arabidopsis thaliana
AT3G54830 2.0kb upstream 2.0kb upstream 5130 true Chr3: 20311901-20317030 Arabidopsis thaliana
AT3G54830 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20315031-20317030 Arabidopsis thaliana
AT3G54830 2.0kb downstream 2.0kb downstream 5130 true Chr3: 20309901-20315030 Arabidopsis thaliana
AT3G54830 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20309901-20311900 Arabidopsis thaliana
AT3G54830 5.0kb upstream 5.0kb upstream 8130 true Chr3: 20311901-20320030 Arabidopsis thaliana
AT3G54830 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20315031-20320030 Arabidopsis thaliana
AT3G54830 5.0kb downstream 5.0kb downstream 8130 true Chr3: 20306901-20315030 Arabidopsis thaliana
AT3G54830 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20306901-20311900 Arabidopsis thaliana
AT3G54830 10.0kb upstream 10.0kb upstream 13130 true Chr3: 20311901-20325030 Arabidopsis thaliana
AT3G54830 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20315031-20325030 Arabidopsis thaliana
AT3G54830 10.0kb downstream 10.0kb downstream 13130 true Chr3: 20301901-20315030 Arabidopsis thaliana
AT3G54830 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20301901-20311900 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374006 5261 Brassicaceae View MSA
123800665 5264 Brassicales-Malvales View MSA
124298055 5266 SBM View MSA
124149795 5268 Malvidae View MSA
123875533 5270 Rosid View MSA
123459335 5271 Pentapetalae View MSA
122494727 5272 Eudicot View MSA
122050911 5273 Angiosperm View MSA
123429000 5275 Viridiplantae View MSA
121351519 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.377       High
cufflinks 0.024     Low Low
cufflinks 0.508        
cufflinks 0.04     Low  
cufflinks 0.387        
cufflinks 0.101     Low  

0 Strain