Gene : AT3G54790 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23315//PTHR23315:SF119 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 3 Genomic Order:  4517
Name:  ? AT3G54790 Secondary Identifier:  ? PAC:19664409
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54790 0.5kb upstream 0.5kb upstream 4092 true Chr3: 20281535-20285626 Arabidopsis thaliana
AT3G54790 0.5kb upstream 0.5kb upstream 500 false Chr3: 20285127-20285626 Arabidopsis thaliana
AT3G54790 0.5kb downstream 0.5kb downstream 4092 true Chr3: 20281035-20285126 Arabidopsis thaliana
AT3G54790 0.5kb downstream 0.5kb downstream 500 false Chr3: 20281035-20281534 Arabidopsis thaliana
AT3G54790 1.0kb upstream 1.0kb upstream 4592 true Chr3: 20281535-20286126 Arabidopsis thaliana
AT3G54790 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20285127-20286126 Arabidopsis thaliana
AT3G54790 1.0kb downstream 1.0kb downstream 4592 true Chr3: 20280535-20285126 Arabidopsis thaliana
AT3G54790 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20280535-20281534 Arabidopsis thaliana
AT3G54790 2.0kb upstream 2.0kb upstream 5592 true Chr3: 20281535-20287126 Arabidopsis thaliana
AT3G54790 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20285127-20287126 Arabidopsis thaliana
AT3G54790 2.0kb downstream 2.0kb downstream 5592 true Chr3: 20279535-20285126 Arabidopsis thaliana
AT3G54790 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20279535-20281534 Arabidopsis thaliana
AT3G54790 5.0kb upstream 5.0kb upstream 8592 true Chr3: 20281535-20290126 Arabidopsis thaliana
AT3G54790 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20285127-20290126 Arabidopsis thaliana
AT3G54790 5.0kb downstream 5.0kb downstream 8592 true Chr3: 20276535-20285126 Arabidopsis thaliana
AT3G54790 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20276535-20281534 Arabidopsis thaliana
AT3G54790 10.0kb upstream 10.0kb upstream 13592 true Chr3: 20281535-20295126 Arabidopsis thaliana
AT3G54790 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20285127-20295126 Arabidopsis thaliana
AT3G54790 10.0kb downstream 10.0kb downstream 13592 true Chr3: 20271535-20285126 Arabidopsis thaliana
AT3G54790 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20271535-20281534 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372135 5261 Brassicaceae View MSA
123829079 5264 Brassicales-Malvales View MSA
124344336 5266 SBM View MSA
124243678 5268 Malvidae View MSA
124067773 5270 Rosid View MSA
123748124 5271 Pentapetalae View MSA
122789337 5272 Eudicot View MSA
122048814 5273 Angiosperm View MSA
121345933 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.971       High
cufflinks 3.563       Low
cufflinks 4.327        
cufflinks 4.077        
cufflinks 4.295        
cufflinks 3.925        

0 Strain