Gene : AT3G54760 A. thaliana TAIR10
Defline:  (1 of 1) PTHR35491:SF2 - DENTIN SIALOPHOSPHOPROTEIN-RELATED PROTEIN Genomic Order:  4514
Name:  ? AT3G54760 Secondary Identifier:  ? PAC:19659477
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54760 0.5kb upstream 0.5kb upstream 3878 true Chr3: 20269080-20272957 Arabidopsis thaliana
AT3G54760 0.5kb upstream 0.5kb upstream 500 false Chr3: 20272458-20272957 Arabidopsis thaliana
AT3G54760 0.5kb downstream 0.5kb downstream 3878 true Chr3: 20268580-20272457 Arabidopsis thaliana
AT3G54760 0.5kb downstream 0.5kb downstream 500 false Chr3: 20268580-20269079 Arabidopsis thaliana
AT3G54760 1.0kb upstream 1.0kb upstream 4378 true Chr3: 20269080-20273457 Arabidopsis thaliana
AT3G54760 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20272458-20273457 Arabidopsis thaliana
AT3G54760 1.0kb downstream 1.0kb downstream 4378 true Chr3: 20268080-20272457 Arabidopsis thaliana
AT3G54760 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20268080-20269079 Arabidopsis thaliana
AT3G54760 2.0kb upstream 2.0kb upstream 5378 true Chr3: 20269080-20274457 Arabidopsis thaliana
AT3G54760 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20272458-20274457 Arabidopsis thaliana
AT3G54760 2.0kb downstream 2.0kb downstream 5378 true Chr3: 20267080-20272457 Arabidopsis thaliana
AT3G54760 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20267080-20269079 Arabidopsis thaliana
AT3G54760 5.0kb upstream 5.0kb upstream 8378 true Chr3: 20269080-20277457 Arabidopsis thaliana
AT3G54760 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20272458-20277457 Arabidopsis thaliana
AT3G54760 5.0kb downstream 5.0kb downstream 8378 true Chr3: 20264080-20272457 Arabidopsis thaliana
AT3G54760 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20264080-20269079 Arabidopsis thaliana
AT3G54760 10.0kb upstream 10.0kb upstream 13378 true Chr3: 20269080-20282457 Arabidopsis thaliana
AT3G54760 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20272458-20282457 Arabidopsis thaliana
AT3G54760 10.0kb downstream 10.0kb downstream 13378 true Chr3: 20259080-20272457 Arabidopsis thaliana
AT3G54760 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20259080-20269079 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381151 5261 Brassicaceae View MSA
123836703 5264 Brassicales-Malvales View MSA
124322196 5266 SBM View MSA
124169099 5268 Malvidae View MSA
124071985 5270 Rosid View MSA
123749922 5271 Pentapetalae View MSA
122795074 5272 Eudicot View MSA
122049561 5273 Angiosperm View MSA
121311475 5274 Embryophyte View MSA
123348768 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.043        
cufflinks 13.997        
cufflinks 10.44       Low
cufflinks 15.768        
cufflinks 9.913       Low
cufflinks 16.114       High

0 Strain