Gene : AT3G54630 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10643 - KINETOCHORE PROTEIN NDC80 Genomic Order:  4501
Name:  ? AT3G54630 Secondary Identifier:  ? PAC:19658742
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54630 0.5kb upstream 0.5kb upstream 2432 true Chr3: 20221097-20223528 Arabidopsis thaliana
AT3G54630 0.5kb upstream 0.5kb upstream 500 false Chr3: 20223029-20223528 Arabidopsis thaliana
AT3G54630 0.5kb downstream 0.5kb downstream 2432 true Chr3: 20220597-20223028 Arabidopsis thaliana
AT3G54630 0.5kb downstream 0.5kb downstream 500 false Chr3: 20220597-20221096 Arabidopsis thaliana
AT3G54630 1.0kb upstream 1.0kb upstream 2932 true Chr3: 20221097-20224028 Arabidopsis thaliana
AT3G54630 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20223029-20224028 Arabidopsis thaliana
AT3G54630 1.0kb downstream 1.0kb downstream 2932 true Chr3: 20220097-20223028 Arabidopsis thaliana
AT3G54630 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20220097-20221096 Arabidopsis thaliana
AT3G54630 2.0kb upstream 2.0kb upstream 3932 true Chr3: 20221097-20225028 Arabidopsis thaliana
AT3G54630 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20223029-20225028 Arabidopsis thaliana
AT3G54630 2.0kb downstream 2.0kb downstream 3932 true Chr3: 20219097-20223028 Arabidopsis thaliana
AT3G54630 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20219097-20221096 Arabidopsis thaliana
AT3G54630 5.0kb upstream 5.0kb upstream 6932 true Chr3: 20221097-20228028 Arabidopsis thaliana
AT3G54630 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20223029-20228028 Arabidopsis thaliana
AT3G54630 5.0kb downstream 5.0kb downstream 6932 true Chr3: 20216097-20223028 Arabidopsis thaliana
AT3G54630 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20216097-20221096 Arabidopsis thaliana
AT3G54630 10.0kb upstream 10.0kb upstream 11932 true Chr3: 20221097-20233028 Arabidopsis thaliana
AT3G54630 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20223029-20233028 Arabidopsis thaliana
AT3G54630 10.0kb downstream 10.0kb downstream 11932 true Chr3: 20211097-20223028 Arabidopsis thaliana
AT3G54630 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20211097-20221096 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361002 5261 Brassicaceae View MSA
123834956 5264 Brassicales-Malvales View MSA
124343718 5266 SBM View MSA
124239490 5268 Malvidae View MSA
124064333 5270 Rosid View MSA
123737322 5271 Pentapetalae View MSA
122786074 5272 Eudicot View MSA
122049067 5273 Angiosperm View MSA
121344778 5274 Embryophyte View MSA
123428580 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.766        
cufflinks 4.196        
cufflinks 1.248        
cufflinks 4.632        
cufflinks 1.089       Low
cufflinks 5.44       High

0 Strain