Gene : SRS6 A. thaliana TAIR10
Primary Identifier:  ? AT3G54430 Defline:  (1 of 10) PF05142 - Domain of unknown function (DUF702) (DUF702)
Genomic Order:  4481 Name:  ? AT3G54430
Secondary Identifier:  ? PAC:19662871
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54430 0.5kb upstream 0.5kb upstream 1527 true Chr3: 20147101-20148627 Arabidopsis thaliana
AT3G54430 0.5kb upstream 0.5kb upstream 500 false Chr3: 20148128-20148627 Arabidopsis thaliana
AT3G54430 0.5kb downstream 0.5kb downstream 1527 true Chr3: 20146601-20148127 Arabidopsis thaliana
AT3G54430 0.5kb downstream 0.5kb downstream 500 false Chr3: 20146601-20147100 Arabidopsis thaliana
AT3G54430 1.0kb upstream 1.0kb upstream 2027 true Chr3: 20147101-20149127 Arabidopsis thaliana
AT3G54430 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20148128-20149127 Arabidopsis thaliana
AT3G54430 1.0kb downstream 1.0kb downstream 2027 true Chr3: 20146101-20148127 Arabidopsis thaliana
AT3G54430 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20146101-20147100 Arabidopsis thaliana
AT3G54430 2.0kb upstream 2.0kb upstream 3027 true Chr3: 20147101-20150127 Arabidopsis thaliana
AT3G54430 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20148128-20150127 Arabidopsis thaliana
AT3G54430 2.0kb downstream 2.0kb downstream 3027 true Chr3: 20145101-20148127 Arabidopsis thaliana
AT3G54430 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20145101-20147100 Arabidopsis thaliana
AT3G54430 5.0kb upstream 5.0kb upstream 6027 true Chr3: 20147101-20153127 Arabidopsis thaliana
AT3G54430 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20148128-20153127 Arabidopsis thaliana
AT3G54430 5.0kb downstream 5.0kb downstream 6027 true Chr3: 20142101-20148127 Arabidopsis thaliana
AT3G54430 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20142101-20147100 Arabidopsis thaliana
AT3G54430 10.0kb upstream 10.0kb upstream 11027 true Chr3: 20147101-20158127 Arabidopsis thaliana
AT3G54430 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20148128-20158127 Arabidopsis thaliana
AT3G54430 10.0kb downstream 10.0kb downstream 11027 true Chr3: 20137101-20148127 Arabidopsis thaliana
AT3G54430 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20137101-20147100 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374445 5261 Brassicaceae View MSA
123800760 5264 Brassicales-Malvales View MSA
124338809 5266 SBM View MSA
124180891 5268 Malvidae View MSA
123903056 5270 Rosid View MSA
123749314 5271 Pentapetalae View MSA
122796752 5272 Eudicot View MSA
122049669 5273 Angiosperm View MSA
121344202 5274 Embryophyte View MSA
123379999 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.658        
cufflinks 28.762       High
cufflinks 4.856        
cufflinks 23.077        
cufflinks 2.841       Low
cufflinks 23.068        

0 Strain