Gene : AT3G54440 A. thaliana TAIR10
Defline:  (1 of 1) K01190 - beta-galactosidase (lacZ) Genomic Order:  4482
Name:  ? AT3G54440 Secondary Identifier:  ? PAC:19661039
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54440 0.5kb upstream 0.5kb upstream 9347 true Chr3: 20148292-20157638 Arabidopsis thaliana
AT3G54440 0.5kb upstream 0.5kb upstream 500 false Chr3: 20157139-20157638 Arabidopsis thaliana
AT3G54440 0.5kb downstream 0.5kb downstream 9347 true Chr3: 20147792-20157138 Arabidopsis thaliana
AT3G54440 0.5kb downstream 0.5kb downstream 500 false Chr3: 20147792-20148291 Arabidopsis thaliana
AT3G54440 1.0kb upstream 1.0kb upstream 9847 true Chr3: 20148292-20158138 Arabidopsis thaliana
AT3G54440 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20157139-20158138 Arabidopsis thaliana
AT3G54440 1.0kb downstream 1.0kb downstream 9847 true Chr3: 20147292-20157138 Arabidopsis thaliana
AT3G54440 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20147292-20148291 Arabidopsis thaliana
AT3G54440 2.0kb upstream 2.0kb upstream 10847 true Chr3: 20148292-20159138 Arabidopsis thaliana
AT3G54440 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20157139-20159138 Arabidopsis thaliana
AT3G54440 2.0kb downstream 2.0kb downstream 10847 true Chr3: 20146292-20157138 Arabidopsis thaliana
AT3G54440 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20146292-20148291 Arabidopsis thaliana
AT3G54440 5.0kb upstream 5.0kb upstream 13847 true Chr3: 20148292-20162138 Arabidopsis thaliana
AT3G54440 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20157139-20162138 Arabidopsis thaliana
AT3G54440 5.0kb downstream 5.0kb downstream 13847 true Chr3: 20143292-20157138 Arabidopsis thaliana
AT3G54440 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20143292-20148291 Arabidopsis thaliana
AT3G54440 10.0kb upstream 10.0kb upstream 18847 true Chr3: 20148292-20167138 Arabidopsis thaliana
AT3G54440 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20157139-20167138 Arabidopsis thaliana
AT3G54440 10.0kb downstream 10.0kb downstream 18847 true Chr3: 20138292-20157138 Arabidopsis thaliana
AT3G54440 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20138292-20148291 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369155 5261 Brassicaceae View MSA
123830728 5264 Brassicales-Malvales View MSA
124338662 5266 SBM View MSA
124245582 5268 Malvidae View MSA
124060617 5270 Rosid View MSA
123738127 5271 Pentapetalae View MSA
122786058 5272 Eudicot View MSA
122041739 5273 Angiosperm View MSA
121344656 5274 Embryophyte View MSA
123424001 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.218        
cufflinks 3.178        
cufflinks 4.116        
cufflinks 3.565        
cufflinks 4.636       High
cufflinks 2.922       Low

0 Strain