Gene : SKIP5 A. thaliana TAIR10
Primary Identifier:  ? AT3G54480 Defline:  (1 of 47) PF12937 - F-box-like (F-box-like)
Genomic Order:  4486 Name:  ? AT3G54480
Secondary Identifier:  ? PAC:19663281
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54480 0.5kb upstream 0.5kb upstream 3232 true Chr3: 20170685-20173916 Arabidopsis thaliana
AT3G54480 0.5kb upstream 0.5kb upstream 500 false Chr3: 20173417-20173916 Arabidopsis thaliana
AT3G54480 0.5kb downstream 0.5kb downstream 3232 true Chr3: 20170185-20173416 Arabidopsis thaliana
AT3G54480 0.5kb downstream 0.5kb downstream 500 false Chr3: 20170185-20170684 Arabidopsis thaliana
AT3G54480 1.0kb upstream 1.0kb upstream 3732 true Chr3: 20170685-20174416 Arabidopsis thaliana
AT3G54480 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20173417-20174416 Arabidopsis thaliana
AT3G54480 1.0kb downstream 1.0kb downstream 3732 true Chr3: 20169685-20173416 Arabidopsis thaliana
AT3G54480 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20169685-20170684 Arabidopsis thaliana
AT3G54480 2.0kb upstream 2.0kb upstream 4732 true Chr3: 20170685-20175416 Arabidopsis thaliana
AT3G54480 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20173417-20175416 Arabidopsis thaliana
AT3G54480 2.0kb downstream 2.0kb downstream 4732 true Chr3: 20168685-20173416 Arabidopsis thaliana
AT3G54480 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20168685-20170684 Arabidopsis thaliana
AT3G54480 5.0kb upstream 5.0kb upstream 7732 true Chr3: 20170685-20178416 Arabidopsis thaliana
AT3G54480 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20173417-20178416 Arabidopsis thaliana
AT3G54480 5.0kb downstream 5.0kb downstream 7732 true Chr3: 20165685-20173416 Arabidopsis thaliana
AT3G54480 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20165685-20170684 Arabidopsis thaliana
AT3G54480 10.0kb upstream 10.0kb upstream 12732 true Chr3: 20170685-20183416 Arabidopsis thaliana
AT3G54480 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20173417-20183416 Arabidopsis thaliana
AT3G54480 10.0kb downstream 10.0kb downstream 12732 true Chr3: 20160685-20173416 Arabidopsis thaliana
AT3G54480 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20160685-20170684 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366114 5261 Brassicaceae View MSA
123829754 5264 Brassicales-Malvales View MSA
124338088 5266 SBM View MSA
124238548 5268 Malvidae View MSA
124068432 5270 Rosid View MSA
123740424 5271 Pentapetalae View MSA
122788441 5272 Eudicot View MSA
122045940 5273 Angiosperm View MSA
121344809 5274 Embryophyte View MSA
123423898 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.822       Low
cufflinks 10.05        
cufflinks 7.46        
cufflinks 10.845       High
cufflinks 7.669        
cufflinks 8.7        

0 Strain