Gene : AT3G54470 A. thaliana TAIR10
Defline:  (1 of 1) 2.4.2.10 - Orotate phosphoribosyltransferase / Orotidylic acid phosphorylase Genomic Order:  4485
Name:  ? AT3G54470 Secondary Identifier:  ? PAC:19664004
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY0-162 Arabidopsis thaliana pathologic  
Athaliana PWY-5686 Arabidopsis thaliana pathologic  
Athaliana PWY-7211 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54470 0.5kb upstream 0.5kb upstream 2709 true Chr3: 20168095-20170803 Arabidopsis thaliana
AT3G54470 0.5kb upstream 0.5kb upstream 500 false Chr3: 20170304-20170803 Arabidopsis thaliana
AT3G54470 0.5kb downstream 0.5kb downstream 2709 true Chr3: 20167595-20170303 Arabidopsis thaliana
AT3G54470 0.5kb downstream 0.5kb downstream 500 false Chr3: 20167595-20168094 Arabidopsis thaliana
AT3G54470 1.0kb upstream 1.0kb upstream 3209 true Chr3: 20168095-20171303 Arabidopsis thaliana
AT3G54470 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20170304-20171303 Arabidopsis thaliana
AT3G54470 1.0kb downstream 1.0kb downstream 3209 true Chr3: 20167095-20170303 Arabidopsis thaliana
AT3G54470 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20167095-20168094 Arabidopsis thaliana
AT3G54470 2.0kb upstream 2.0kb upstream 4209 true Chr3: 20168095-20172303 Arabidopsis thaliana
AT3G54470 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20170304-20172303 Arabidopsis thaliana
AT3G54470 2.0kb downstream 2.0kb downstream 4209 true Chr3: 20166095-20170303 Arabidopsis thaliana
AT3G54470 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20166095-20168094 Arabidopsis thaliana
AT3G54470 5.0kb upstream 5.0kb upstream 7209 true Chr3: 20168095-20175303 Arabidopsis thaliana
AT3G54470 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20170304-20175303 Arabidopsis thaliana
AT3G54470 5.0kb downstream 5.0kb downstream 7209 true Chr3: 20163095-20170303 Arabidopsis thaliana
AT3G54470 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20163095-20168094 Arabidopsis thaliana
AT3G54470 10.0kb upstream 10.0kb upstream 12209 true Chr3: 20168095-20180303 Arabidopsis thaliana
AT3G54470 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20170304-20180303 Arabidopsis thaliana
AT3G54470 10.0kb downstream 10.0kb downstream 12209 true Chr3: 20158095-20170303 Arabidopsis thaliana
AT3G54470 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20158095-20168094 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374061 5261 Brassicaceae View MSA
123840006 5264 Brassicales-Malvales View MSA
124338602 5266 SBM View MSA
124250162 5268 Malvidae View MSA
124060638 5270 Rosid View MSA
123751852 5271 Pentapetalae View MSA
122789079 5272 Eudicot View MSA
122042153 5273 Angiosperm View MSA
121351237 5274 Embryophyte View MSA
123424950 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.625        
cufflinks 34.617     High  
cufflinks 27.429     High  
cufflinks 38.575     High  
cufflinks 20.311       Low
cufflinks 47.04     High High

0 Strain