Gene : AT3G60000 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31807:SF6 - PROTEIN ENDOSPERM DEFECTIVE 1-RELATED Genomic Order:  5056
Name:  ? AT3G60000 Secondary Identifier:  ? PAC:19661202
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G60000 0.5kb upstream 0.5kb upstream 2484 true Chr3: 22160384-22162867 Arabidopsis thaliana
AT3G60000 0.5kb upstream 0.5kb upstream 500 false Chr3: 22160384-22160883 Arabidopsis thaliana
AT3G60000 0.5kb downstream 0.5kb downstream 2484 true Chr3: 22160884-22163367 Arabidopsis thaliana
AT3G60000 0.5kb downstream 0.5kb downstream 500 false Chr3: 22162868-22163367 Arabidopsis thaliana
AT3G60000 1.0kb upstream 1.0kb upstream 2984 true Chr3: 22159884-22162867 Arabidopsis thaliana
AT3G60000 1.0kb upstream 1.0kb upstream 1000 false Chr3: 22159884-22160883 Arabidopsis thaliana
AT3G60000 1.0kb downstream 1.0kb downstream 2984 true Chr3: 22160884-22163867 Arabidopsis thaliana
AT3G60000 1.0kb downstream 1.0kb downstream 1000 false Chr3: 22162868-22163867 Arabidopsis thaliana
AT3G60000 2.0kb upstream 2.0kb upstream 3984 true Chr3: 22158884-22162867 Arabidopsis thaliana
AT3G60000 2.0kb upstream 2.0kb upstream 2000 false Chr3: 22158884-22160883 Arabidopsis thaliana
AT3G60000 2.0kb downstream 2.0kb downstream 3984 true Chr3: 22160884-22164867 Arabidopsis thaliana
AT3G60000 2.0kb downstream 2.0kb downstream 2000 false Chr3: 22162868-22164867 Arabidopsis thaliana
AT3G60000 5.0kb upstream 5.0kb upstream 6984 true Chr3: 22155884-22162867 Arabidopsis thaliana
AT3G60000 5.0kb upstream 5.0kb upstream 5000 false Chr3: 22155884-22160883 Arabidopsis thaliana
AT3G60000 5.0kb downstream 5.0kb downstream 6984 true Chr3: 22160884-22167867 Arabidopsis thaliana
AT3G60000 5.0kb downstream 5.0kb downstream 5000 false Chr3: 22162868-22167867 Arabidopsis thaliana
AT3G60000 10.0kb upstream 10.0kb upstream 11984 true Chr3: 22150884-22162867 Arabidopsis thaliana
AT3G60000 10.0kb upstream 10.0kb upstream 10000 false Chr3: 22150884-22160883 Arabidopsis thaliana
AT3G60000 10.0kb downstream 10.0kb downstream 11984 true Chr3: 22160884-22172867 Arabidopsis thaliana
AT3G60000 10.0kb downstream 10.0kb downstream 10000 false Chr3: 22162868-22172867 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375884 5261 Brassicaceae View MSA
123801080 5264 Brassicales-Malvales View MSA
124298421 5266 SBM View MSA
124150070 5268 Malvidae View MSA
124067070 5270 Rosid View MSA
123752575 5271 Pentapetalae View MSA
122788375 5272 Eudicot View MSA
122044458 5273 Angiosperm View MSA
121348675 5274 Embryophyte View MSA
123426167 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.015     Low  
cufflinks 0.169     Low  
cufflinks 0.011     Low Low
cufflinks 0.056     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.272     Low High

0 Strain