Gene : AT3G59850 A. thaliana TAIR10
Defline:  (1 of 5) K01184 - polygalacturonase (E3.2.1.15) Genomic Order:  5042
Name:  ? AT3G59850 Secondary Identifier:  ? PAC:19663157
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G59850 0.5kb upstream 0.5kb upstream 2946 true Chr3: 22109164-22112109 Arabidopsis thaliana
AT3G59850 0.5kb upstream 0.5kb upstream 500 false Chr3: 22111610-22112109 Arabidopsis thaliana
AT3G59850 0.5kb downstream 0.5kb downstream 2946 true Chr3: 22108664-22111609 Arabidopsis thaliana
AT3G59850 0.5kb downstream 0.5kb downstream 500 false Chr3: 22108664-22109163 Arabidopsis thaliana
AT3G59850 1.0kb upstream 1.0kb upstream 3446 true Chr3: 22109164-22112609 Arabidopsis thaliana
AT3G59850 1.0kb upstream 1.0kb upstream 1000 false Chr3: 22111610-22112609 Arabidopsis thaliana
AT3G59850 1.0kb downstream 1.0kb downstream 3446 true Chr3: 22108164-22111609 Arabidopsis thaliana
AT3G59850 1.0kb downstream 1.0kb downstream 1000 false Chr3: 22108164-22109163 Arabidopsis thaliana
AT3G59850 2.0kb upstream 2.0kb upstream 4446 true Chr3: 22109164-22113609 Arabidopsis thaliana
AT3G59850 2.0kb upstream 2.0kb upstream 2000 false Chr3: 22111610-22113609 Arabidopsis thaliana
AT3G59850 2.0kb downstream 2.0kb downstream 4446 true Chr3: 22107164-22111609 Arabidopsis thaliana
AT3G59850 2.0kb downstream 2.0kb downstream 2000 false Chr3: 22107164-22109163 Arabidopsis thaliana
AT3G59850 5.0kb upstream 5.0kb upstream 7446 true Chr3: 22109164-22116609 Arabidopsis thaliana
AT3G59850 5.0kb upstream 5.0kb upstream 5000 false Chr3: 22111610-22116609 Arabidopsis thaliana
AT3G59850 5.0kb downstream 5.0kb downstream 7446 true Chr3: 22104164-22111609 Arabidopsis thaliana
AT3G59850 5.0kb downstream 5.0kb downstream 5000 false Chr3: 22104164-22109163 Arabidopsis thaliana
AT3G59850 10.0kb upstream 10.0kb upstream 12446 true Chr3: 22109164-22121609 Arabidopsis thaliana
AT3G59850 10.0kb upstream 10.0kb upstream 10000 false Chr3: 22111610-22121609 Arabidopsis thaliana
AT3G59850 10.0kb downstream 10.0kb downstream 12446 true Chr3: 22099164-22111609 Arabidopsis thaliana
AT3G59850 10.0kb downstream 10.0kb downstream 10000 false Chr3: 22099164-22109163 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365948 5261 Brassicaceae View MSA
123837359 5264 Brassicales-Malvales View MSA
124322295 5266 SBM View MSA
124252972 5268 Malvidae View MSA
124060937 5270 Rosid View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.035     Low  
cufflinks 0.099     Low  
cufflinks 0.026     Low Low
cufflinks 0.418       High
cufflinks 0.057     Low  
cufflinks 0.569       High

0 Strain