Gene : AT3G59540 A. thaliana TAIR10
Defline:  (1 of 2) K02923 - large subunit ribosomal protein L38e (RP-L38e, RPL38) Genomic Order:  5012
Name:  ? AT3G59540 Secondary Identifier:  ? PAC:19658433
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G59540 0.5kb upstream 0.5kb upstream 1660 true Chr3: 21995677-21997336 Arabidopsis thaliana
AT3G59540 0.5kb upstream 0.5kb upstream 500 false Chr3: 21996837-21997336 Arabidopsis thaliana
AT3G59540 0.5kb downstream 0.5kb downstream 1660 true Chr3: 21995177-21996836 Arabidopsis thaliana
AT3G59540 0.5kb downstream 0.5kb downstream 500 false Chr3: 21995177-21995676 Arabidopsis thaliana
AT3G59540 1.0kb upstream 1.0kb upstream 2160 true Chr3: 21995677-21997836 Arabidopsis thaliana
AT3G59540 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21996837-21997836 Arabidopsis thaliana
AT3G59540 1.0kb downstream 1.0kb downstream 2160 true Chr3: 21994677-21996836 Arabidopsis thaliana
AT3G59540 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21994677-21995676 Arabidopsis thaliana
AT3G59540 2.0kb upstream 2.0kb upstream 3160 true Chr3: 21995677-21998836 Arabidopsis thaliana
AT3G59540 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21996837-21998836 Arabidopsis thaliana
AT3G59540 2.0kb downstream 2.0kb downstream 3160 true Chr3: 21993677-21996836 Arabidopsis thaliana
AT3G59540 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21993677-21995676 Arabidopsis thaliana
AT3G59540 5.0kb upstream 5.0kb upstream 6160 true Chr3: 21995677-22001836 Arabidopsis thaliana
AT3G59540 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21996837-22001836 Arabidopsis thaliana
AT3G59540 5.0kb downstream 5.0kb downstream 6160 true Chr3: 21990677-21996836 Arabidopsis thaliana
AT3G59540 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21990677-21995676 Arabidopsis thaliana
AT3G59540 10.0kb upstream 10.0kb upstream 11160 true Chr3: 21995677-22006836 Arabidopsis thaliana
AT3G59540 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21996837-22006836 Arabidopsis thaliana
AT3G59540 10.0kb downstream 10.0kb downstream 11160 true Chr3: 21985677-21996836 Arabidopsis thaliana
AT3G59540 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21985677-21995676 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029666 5273 Angiosperm View MSA
122380033 5261 Brassicaceae View MSA
123839814 5264 Brassicales-Malvales View MSA
124350744 5266 SBM View MSA
124254089 5268 Malvidae View MSA
124074373 5270 Rosid View MSA
123750152 5271 Pentapetalae View MSA
122794948 5272 Eudicot View MSA
121351263 5274 Embryophyte View MSA
123428665 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 89.406     High  
cufflinks 169.914     High  
cufflinks 85.484     High  
cufflinks 157.232     High  
cufflinks 72.4     High Low
cufflinks 176.344     High High

0 Strain