Gene : AT3G58900 A. thaliana TAIR10
Defline:  (1 of 43) PTHR31639//PTHR31639:SF6 - FAMILY NOT NAMED // FBD DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  4946
Name:  ? AT3G58900 Secondary Identifier:  ? PAC:19661050
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G58900 0.5kb upstream 0.5kb upstream 2431 true Chr3: 21772313-21774743 Arabidopsis thaliana
AT3G58900 0.5kb upstream 0.5kb upstream 500 false Chr3: 21772313-21772812 Arabidopsis thaliana
AT3G58900 0.5kb downstream 0.5kb downstream 2431 true Chr3: 21772813-21775243 Arabidopsis thaliana
AT3G58900 0.5kb downstream 0.5kb downstream 500 false Chr3: 21774744-21775243 Arabidopsis thaliana
AT3G58900 1.0kb upstream 1.0kb upstream 2931 true Chr3: 21771813-21774743 Arabidopsis thaliana
AT3G58900 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21771813-21772812 Arabidopsis thaliana
AT3G58900 1.0kb downstream 1.0kb downstream 2931 true Chr3: 21772813-21775743 Arabidopsis thaliana
AT3G58900 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21774744-21775743 Arabidopsis thaliana
AT3G58900 2.0kb upstream 2.0kb upstream 3931 true Chr3: 21770813-21774743 Arabidopsis thaliana
AT3G58900 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21770813-21772812 Arabidopsis thaliana
AT3G58900 2.0kb downstream 2.0kb downstream 3931 true Chr3: 21772813-21776743 Arabidopsis thaliana
AT3G58900 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21774744-21776743 Arabidopsis thaliana
AT3G58900 5.0kb upstream 5.0kb upstream 6931 true Chr3: 21767813-21774743 Arabidopsis thaliana
AT3G58900 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21767813-21772812 Arabidopsis thaliana
AT3G58900 5.0kb downstream 5.0kb downstream 6931 true Chr3: 21772813-21779743 Arabidopsis thaliana
AT3G58900 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21774744-21779743 Arabidopsis thaliana
AT3G58900 10.0kb upstream 10.0kb upstream 11931 true Chr3: 21762813-21774743 Arabidopsis thaliana
AT3G58900 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21762813-21772812 Arabidopsis thaliana
AT3G58900 10.0kb downstream 10.0kb downstream 11931 true Chr3: 21772813-21784743 Arabidopsis thaliana
AT3G58900 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21774744-21784743 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375844 5261 Brassicaceae View MSA
123801069 5264 Brassicales-Malvales View MSA
124350537 5266 SBM View MSA
124254039 5268 Malvidae View MSA
124073024 5270 Rosid View MSA
123753592 5271 Pentapetalae View MSA
122797964 5272 Eudicot View MSA
122050940 5273 Angiosperm View MSA
121351679 5274 Embryophyte View MSA
123382274 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.614       Low
cufflinks 2.928       High
cufflinks 1.783        
cufflinks 2.652        
cufflinks 1.899        
cufflinks 2.249        

0 Strain