Gene : CSY2 A. thaliana TAIR10
Primary Identifier:  ? AT3G58750 Defline:  (1 of 4) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA)
Genomic Order:  4931 Name:  ? AT3G58750
Secondary Identifier:  ? PAC:19659363
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Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLYOXYLATE-BYPASS Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  
Athaliana PWY-5690 Arabidopsis thaliana pathologic  
Athaliana PWY-6549 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G58750 0.5kb upstream 0.5kb upstream 3877 true Chr3: 21724314-21728190 Arabidopsis thaliana
AT3G58750 0.5kb upstream 0.5kb upstream 500 false Chr3: 21727691-21728190 Arabidopsis thaliana
AT3G58750 0.5kb downstream 0.5kb downstream 3877 true Chr3: 21723814-21727690 Arabidopsis thaliana
AT3G58750 0.5kb downstream 0.5kb downstream 500 false Chr3: 21723814-21724313 Arabidopsis thaliana
AT3G58750 1.0kb upstream 1.0kb upstream 4377 true Chr3: 21724314-21728690 Arabidopsis thaliana
AT3G58750 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21727691-21728690 Arabidopsis thaliana
AT3G58750 1.0kb downstream 1.0kb downstream 4377 true Chr3: 21723314-21727690 Arabidopsis thaliana
AT3G58750 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21723314-21724313 Arabidopsis thaliana
AT3G58750 2.0kb upstream 2.0kb upstream 5377 true Chr3: 21724314-21729690 Arabidopsis thaliana
AT3G58750 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21727691-21729690 Arabidopsis thaliana
AT3G58750 2.0kb downstream 2.0kb downstream 5377 true Chr3: 21722314-21727690 Arabidopsis thaliana
AT3G58750 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21722314-21724313 Arabidopsis thaliana
AT3G58750 5.0kb upstream 5.0kb upstream 8377 true Chr3: 21724314-21732690 Arabidopsis thaliana
AT3G58750 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21727691-21732690 Arabidopsis thaliana
AT3G58750 5.0kb downstream 5.0kb downstream 8377 true Chr3: 21719314-21727690 Arabidopsis thaliana
AT3G58750 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21719314-21724313 Arabidopsis thaliana
AT3G58750 10.0kb upstream 10.0kb upstream 13377 true Chr3: 21724314-21737690 Arabidopsis thaliana
AT3G58750 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21727691-21737690 Arabidopsis thaliana
AT3G58750 10.0kb downstream 10.0kb downstream 13377 true Chr3: 21714314-21727690 Arabidopsis thaliana
AT3G58750 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21714314-21724313 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373975 5261 Brassicaceae View MSA
123836656 5264 Brassicales-Malvales View MSA
124345629 5266 SBM View MSA
124251480 5268 Malvidae View MSA
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.887        
cufflinks 13.035       Low
cufflinks 18.918        
cufflinks 16.381        
cufflinks 26.57     High High
cufflinks 13.573        

0 Strain