Gene : SHP1 A. thaliana TAIR10
Primary Identifier:  ? AT3G58780 Defline:  (1 of 2) PTHR11945//PTHR11945:SF150 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED
Genomic Order:  4934 Name:  ? AT3G58780
Secondary Identifier:  ? PAC:19662658
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G58780 0.5kb upstream 0.5kb upstream 4558 true Chr3: 21737960-21742517 Arabidopsis thaliana
AT3G58780 0.5kb upstream 0.5kb upstream 500 false Chr3: 21737960-21738459 Arabidopsis thaliana
AT3G58780 0.5kb downstream 0.5kb downstream 4558 true Chr3: 21738460-21743017 Arabidopsis thaliana
AT3G58780 0.5kb downstream 0.5kb downstream 500 false Chr3: 21742518-21743017 Arabidopsis thaliana
AT3G58780 1.0kb upstream 1.0kb upstream 5058 true Chr3: 21737460-21742517 Arabidopsis thaliana
AT3G58780 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21737460-21738459 Arabidopsis thaliana
AT3G58780 1.0kb downstream 1.0kb downstream 5058 true Chr3: 21738460-21743517 Arabidopsis thaliana
AT3G58780 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21742518-21743517 Arabidopsis thaliana
AT3G58780 2.0kb upstream 2.0kb upstream 6058 true Chr3: 21736460-21742517 Arabidopsis thaliana
AT3G58780 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21736460-21738459 Arabidopsis thaliana
AT3G58780 2.0kb downstream 2.0kb downstream 6058 true Chr3: 21738460-21744517 Arabidopsis thaliana
AT3G58780 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21742518-21744517 Arabidopsis thaliana
AT3G58780 5.0kb upstream 5.0kb upstream 9058 true Chr3: 21733460-21742517 Arabidopsis thaliana
AT3G58780 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21733460-21738459 Arabidopsis thaliana
AT3G58780 5.0kb downstream 5.0kb downstream 9058 true Chr3: 21738460-21747517 Arabidopsis thaliana
AT3G58780 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21742518-21747517 Arabidopsis thaliana
AT3G58780 10.0kb upstream 10.0kb upstream 14058 true Chr3: 21728460-21742517 Arabidopsis thaliana
AT3G58780 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21728460-21738459 Arabidopsis thaliana
AT3G58780 10.0kb downstream 10.0kb downstream 14058 true Chr3: 21738460-21752517 Arabidopsis thaliana
AT3G58780 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21742518-21752517 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364573 5261 Brassicaceae View MSA
123838020 5264 Brassicales-Malvales View MSA
124349939 5266 SBM View MSA
124253433 5268 Malvidae View MSA
124063483 5270 Rosid View MSA
123747867 5271 Pentapetalae View MSA
122793842 5272 Eudicot View MSA
122049629 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.019     Low  
cufflinks 0.068     Low High
cufflinks 0.018     Low  
cufflinks 0.049     Low  
cufflinks 0.017     Low  
cufflinks 0.04     Low  

0 Strain