Gene : AT3G58840 A. thaliana TAIR10
Defline:  (1 of 2) PTHR18937//PTHR18937:SF242 - STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER // SUBFAMILY NOT NAMED Genomic Order:  4940
Name:  ? AT3G58840 Secondary Identifier:  ? PAC:19659010
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G58840 0.5kb upstream 0.5kb upstream 1961 true Chr3: 21757312-21759272 Arabidopsis thaliana
AT3G58840 0.5kb upstream 0.5kb upstream 500 false Chr3: 21758773-21759272 Arabidopsis thaliana
AT3G58840 0.5kb downstream 0.5kb downstream 1961 true Chr3: 21756812-21758772 Arabidopsis thaliana
AT3G58840 0.5kb downstream 0.5kb downstream 500 false Chr3: 21756812-21757311 Arabidopsis thaliana
AT3G58840 1.0kb upstream 1.0kb upstream 2461 true Chr3: 21757312-21759772 Arabidopsis thaliana
AT3G58840 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21758773-21759772 Arabidopsis thaliana
AT3G58840 1.0kb downstream 1.0kb downstream 2461 true Chr3: 21756312-21758772 Arabidopsis thaliana
AT3G58840 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21756312-21757311 Arabidopsis thaliana
AT3G58840 2.0kb upstream 2.0kb upstream 3461 true Chr3: 21757312-21760772 Arabidopsis thaliana
AT3G58840 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21758773-21760772 Arabidopsis thaliana
AT3G58840 2.0kb downstream 2.0kb downstream 3461 true Chr3: 21755312-21758772 Arabidopsis thaliana
AT3G58840 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21755312-21757311 Arabidopsis thaliana
AT3G58840 5.0kb upstream 5.0kb upstream 6461 true Chr3: 21757312-21763772 Arabidopsis thaliana
AT3G58840 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21758773-21763772 Arabidopsis thaliana
AT3G58840 5.0kb downstream 5.0kb downstream 6461 true Chr3: 21752312-21758772 Arabidopsis thaliana
AT3G58840 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21752312-21757311 Arabidopsis thaliana
AT3G58840 10.0kb upstream 10.0kb upstream 11461 true Chr3: 21757312-21768772 Arabidopsis thaliana
AT3G58840 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21758773-21768772 Arabidopsis thaliana
AT3G58840 10.0kb downstream 10.0kb downstream 11461 true Chr3: 21747312-21758772 Arabidopsis thaliana
AT3G58840 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21747312-21757311 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379011 5261 Brassicaceae View MSA
123836676 5264 Brassicales-Malvales View MSA
124339330 5266 SBM View MSA
124239098 5268 Malvidae View MSA
124068005 5270 Rosid View MSA
123750938 5271 Pentapetalae View MSA
122794865 5272 Eudicot View MSA
122042707 5273 Angiosperm View MSA
121310005 5274 Embryophyte View MSA
123347612 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.637        
cufflinks 13.665        
cufflinks 9.069        
cufflinks 15.103        
cufflinks 7.567       Low
cufflinks 14.981        

0 Strain