Gene : AT3G58700 A. thaliana TAIR10
Defline:  (1 of 4) K02868 - large subunit ribosomal protein L11e (RP-L11e, RPL11) Genomic Order:  4926
Name:  ? AT3G58700 Secondary Identifier:  ? PAC:19664843
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G58700 0.5kb upstream 0.5kb upstream 1893 true Chr3: 21711063-21712955 Arabidopsis thaliana
AT3G58700 0.5kb upstream 0.5kb upstream 500 false Chr3: 21711063-21711562 Arabidopsis thaliana
AT3G58700 0.5kb downstream 0.5kb downstream 1893 true Chr3: 21711563-21713455 Arabidopsis thaliana
AT3G58700 0.5kb downstream 0.5kb downstream 500 false Chr3: 21712956-21713455 Arabidopsis thaliana
AT3G58700 1.0kb upstream 1.0kb upstream 2393 true Chr3: 21710563-21712955 Arabidopsis thaliana
AT3G58700 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21710563-21711562 Arabidopsis thaliana
AT3G58700 1.0kb downstream 1.0kb downstream 2393 true Chr3: 21711563-21713955 Arabidopsis thaliana
AT3G58700 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21712956-21713955 Arabidopsis thaliana
AT3G58700 2.0kb upstream 2.0kb upstream 3393 true Chr3: 21709563-21712955 Arabidopsis thaliana
AT3G58700 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21709563-21711562 Arabidopsis thaliana
AT3G58700 2.0kb downstream 2.0kb downstream 3393 true Chr3: 21711563-21714955 Arabidopsis thaliana
AT3G58700 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21712956-21714955 Arabidopsis thaliana
AT3G58700 5.0kb upstream 5.0kb upstream 6393 true Chr3: 21706563-21712955 Arabidopsis thaliana
AT3G58700 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21706563-21711562 Arabidopsis thaliana
AT3G58700 5.0kb downstream 5.0kb downstream 6393 true Chr3: 21711563-21717955 Arabidopsis thaliana
AT3G58700 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21712956-21717955 Arabidopsis thaliana
AT3G58700 10.0kb upstream 10.0kb upstream 11393 true Chr3: 21701563-21712955 Arabidopsis thaliana
AT3G58700 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21701563-21711562 Arabidopsis thaliana
AT3G58700 10.0kb downstream 10.0kb downstream 11393 true Chr3: 21711563-21722955 Arabidopsis thaliana
AT3G58700 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21712956-21722955 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378859 5261 Brassicaceae View MSA
123837006 5264 Brassicales-Malvales View MSA
124344079 5266 SBM View MSA
124253594 5268 Malvidae View MSA
124072174 5270 Rosid View MSA
123743053 5271 Pentapetalae View MSA
122795904 5272 Eudicot View MSA
122042572 5273 Angiosperm View MSA
121345121 5274 Embryophyte View MSA
123424367 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.328        
cufflinks 41.228     High  
cufflinks 24.82        
cufflinks 41.36     High  
cufflinks 20.083       Low
cufflinks 47.491     High High

0 Strain