Gene : AT3G58610 A. thaliana TAIR10
Defline:  (1 of 1) 1.1.1.86 - Ketol-acid reductoisomerase (NADP(+)) / Dihydroxyisovalerate dehydrogenase (isomerizing) Genomic Order:  4916
Name:  ? AT3G58610 Secondary Identifier:  ? PAC:19662019
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana BRANCHED-CHAIN-AA-SYN-PWY Arabidopsis thaliana pathologic  
Athaliana ILEUSYN-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-3001 Arabidopsis thaliana pathologic  
Athaliana VALSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G58610 0.5kb upstream 0.5kb upstream 4158 true Chr3: 21670933-21675090 Arabidopsis thaliana
AT3G58610 0.5kb upstream 0.5kb upstream 500 false Chr3: 21670933-21671432 Arabidopsis thaliana
AT3G58610 0.5kb downstream 0.5kb downstream 4158 true Chr3: 21671433-21675590 Arabidopsis thaliana
AT3G58610 0.5kb downstream 0.5kb downstream 500 false Chr3: 21675091-21675590 Arabidopsis thaliana
AT3G58610 1.0kb upstream 1.0kb upstream 4658 true Chr3: 21670433-21675090 Arabidopsis thaliana
AT3G58610 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21670433-21671432 Arabidopsis thaliana
AT3G58610 1.0kb downstream 1.0kb downstream 4658 true Chr3: 21671433-21676090 Arabidopsis thaliana
AT3G58610 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21675091-21676090 Arabidopsis thaliana
AT3G58610 2.0kb upstream 2.0kb upstream 5658 true Chr3: 21669433-21675090 Arabidopsis thaliana
AT3G58610 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21669433-21671432 Arabidopsis thaliana
AT3G58610 2.0kb downstream 2.0kb downstream 5658 true Chr3: 21671433-21677090 Arabidopsis thaliana
AT3G58610 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21675091-21677090 Arabidopsis thaliana
AT3G58610 5.0kb upstream 5.0kb upstream 8658 true Chr3: 21666433-21675090 Arabidopsis thaliana
AT3G58610 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21666433-21671432 Arabidopsis thaliana
AT3G58610 5.0kb downstream 5.0kb downstream 8658 true Chr3: 21671433-21680090 Arabidopsis thaliana
AT3G58610 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21675091-21680090 Arabidopsis thaliana
AT3G58610 10.0kb upstream 10.0kb upstream 13658 true Chr3: 21661433-21675090 Arabidopsis thaliana
AT3G58610 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21661433-21671432 Arabidopsis thaliana
AT3G58610 10.0kb downstream 10.0kb downstream 13658 true Chr3: 21671433-21685090 Arabidopsis thaliana
AT3G58610 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21675091-21685090 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368423 5261 Brassicaceae View MSA
123828492 5264 Brassicales-Malvales View MSA
124339638 5266 SBM View MSA
124249053 5268 Malvidae View MSA
124060504 5270 Rosid View MSA
123749649 5271 Pentapetalae View MSA
122794973 5272 Eudicot View MSA
122043531 5273 Angiosperm View MSA
121344443 5274 Embryophyte View MSA
123428276 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.613     High High
cufflinks 18.61       Low
cufflinks 32.828     High  
cufflinks 22.483        
cufflinks 27.157     High  
cufflinks 30.88     High  

0 Strain