Gene : AT3G58200 A. thaliana TAIR10
Defline:  (1 of 64) KOG1987 - Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains Genomic Order:  4875
Name:  ? AT3G58200 Secondary Identifier:  ? PAC:19663279
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G58200 0.5kb upstream 0.5kb upstream 2073 true Chr3: 21559893-21561965 Arabidopsis thaliana
AT3G58200 0.5kb upstream 0.5kb upstream 500 false Chr3: 21561466-21561965 Arabidopsis thaliana
AT3G58200 0.5kb downstream 0.5kb downstream 2073 true Chr3: 21559393-21561465 Arabidopsis thaliana
AT3G58200 0.5kb downstream 0.5kb downstream 500 false Chr3: 21559393-21559892 Arabidopsis thaliana
AT3G58200 1.0kb upstream 1.0kb upstream 2573 true Chr3: 21559893-21562465 Arabidopsis thaliana
AT3G58200 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21561466-21562465 Arabidopsis thaliana
AT3G58200 1.0kb downstream 1.0kb downstream 2573 true Chr3: 21558893-21561465 Arabidopsis thaliana
AT3G58200 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21558893-21559892 Arabidopsis thaliana
AT3G58200 2.0kb upstream 2.0kb upstream 3573 true Chr3: 21559893-21563465 Arabidopsis thaliana
AT3G58200 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21561466-21563465 Arabidopsis thaliana
AT3G58200 2.0kb downstream 2.0kb downstream 3573 true Chr3: 21557893-21561465 Arabidopsis thaliana
AT3G58200 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21557893-21559892 Arabidopsis thaliana
AT3G58200 5.0kb upstream 5.0kb upstream 6573 true Chr3: 21559893-21566465 Arabidopsis thaliana
AT3G58200 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21561466-21566465 Arabidopsis thaliana
AT3G58200 5.0kb downstream 5.0kb downstream 6573 true Chr3: 21554893-21561465 Arabidopsis thaliana
AT3G58200 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21554893-21559892 Arabidopsis thaliana
AT3G58200 10.0kb upstream 10.0kb upstream 11573 true Chr3: 21559893-21571465 Arabidopsis thaliana
AT3G58200 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21561466-21571465 Arabidopsis thaliana
AT3G58200 10.0kb downstream 10.0kb downstream 11573 true Chr3: 21549893-21561465 Arabidopsis thaliana
AT3G58200 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21549893-21559892 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121665424 5273 Angiosperm View MSA
122379968 5261 Brassicaceae View MSA
123802499 5264 Brassicales-Malvales View MSA
124299689 5266 SBM View MSA
124151030 5268 Malvidae View MSA
124050250 5270 Rosid View MSA
123619785 5271 Pentapetalae View MSA
122654221 5272 Eudicot View MSA
123429159 5275 Viridiplantae View MSA
120937392 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.317        
cufflinks 6.521       High
cufflinks 1.059        
cufflinks 5.101        
cufflinks 0.852       Low
cufflinks 5.364        

0 Strain