Gene : SINAT2 A. thaliana TAIR10
Primary Identifier:  ? AT3G58040 Defline:  (1 of 3) PTHR10315//PTHR10315:SF34 - SEVEN IN ABSENTIA HOMOLOG // E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED
Genomic Order:  4859 Name:  ? AT3G58040
Secondary Identifier:  ? PAC:19662339
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G58040 0.5kb upstream 0.5kb upstream 3473 true Chr3: 21488016-21491488 Arabidopsis thaliana
AT3G58040 0.5kb upstream 0.5kb upstream 500 false Chr3: 21488016-21488515 Arabidopsis thaliana
AT3G58040 0.5kb downstream 0.5kb downstream 3473 true Chr3: 21488516-21491988 Arabidopsis thaliana
AT3G58040 0.5kb downstream 0.5kb downstream 500 false Chr3: 21491489-21491988 Arabidopsis thaliana
AT3G58040 1.0kb upstream 1.0kb upstream 3973 true Chr3: 21487516-21491488 Arabidopsis thaliana
AT3G58040 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21487516-21488515 Arabidopsis thaliana
AT3G58040 1.0kb downstream 1.0kb downstream 3973 true Chr3: 21488516-21492488 Arabidopsis thaliana
AT3G58040 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21491489-21492488 Arabidopsis thaliana
AT3G58040 2.0kb upstream 2.0kb upstream 4973 true Chr3: 21486516-21491488 Arabidopsis thaliana
AT3G58040 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21486516-21488515 Arabidopsis thaliana
AT3G58040 2.0kb downstream 2.0kb downstream 4973 true Chr3: 21488516-21493488 Arabidopsis thaliana
AT3G58040 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21491489-21493488 Arabidopsis thaliana
AT3G58040 5.0kb upstream 5.0kb upstream 7973 true Chr3: 21483516-21491488 Arabidopsis thaliana
AT3G58040 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21483516-21488515 Arabidopsis thaliana
AT3G58040 5.0kb downstream 5.0kb downstream 7973 true Chr3: 21488516-21496488 Arabidopsis thaliana
AT3G58040 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21491489-21496488 Arabidopsis thaliana
AT3G58040 10.0kb upstream 10.0kb upstream 12973 true Chr3: 21478516-21491488 Arabidopsis thaliana
AT3G58040 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21478516-21488515 Arabidopsis thaliana
AT3G58040 10.0kb downstream 10.0kb downstream 12973 true Chr3: 21488516-21501488 Arabidopsis thaliana
AT3G58040 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21491489-21501488 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370268 5261 Brassicaceae View MSA
123840552 5264 Brassicales-Malvales View MSA
124344674 5266 SBM View MSA
124246222 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.451        
cufflinks 20.05        
cufflinks 6.6       Low
cufflinks 20.281        
cufflinks 7.122        
cufflinks 20.096        

0 Strain