Gene : AT3G58140 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11538//PTHR11538:SF41 - PHENYLALANYL-TRNA SYNTHETASE // PHENYLALANINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  4869
Name:  ? AT3G58140 Secondary Identifier:  ? PAC:19662875
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G58140 0.5kb upstream 0.5kb upstream 3342 true Chr3: 21529731-21533072 Arabidopsis thaliana
AT3G58140 0.5kb upstream 0.5kb upstream 500 false Chr3: 21532573-21533072 Arabidopsis thaliana
AT3G58140 0.5kb downstream 0.5kb downstream 3342 true Chr3: 21529231-21532572 Arabidopsis thaliana
AT3G58140 0.5kb downstream 0.5kb downstream 500 false Chr3: 21529231-21529730 Arabidopsis thaliana
AT3G58140 1.0kb upstream 1.0kb upstream 3842 true Chr3: 21529731-21533572 Arabidopsis thaliana
AT3G58140 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21532573-21533572 Arabidopsis thaliana
AT3G58140 1.0kb downstream 1.0kb downstream 3842 true Chr3: 21528731-21532572 Arabidopsis thaliana
AT3G58140 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21528731-21529730 Arabidopsis thaliana
AT3G58140 2.0kb upstream 2.0kb upstream 4842 true Chr3: 21529731-21534572 Arabidopsis thaliana
AT3G58140 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21532573-21534572 Arabidopsis thaliana
AT3G58140 2.0kb downstream 2.0kb downstream 4842 true Chr3: 21527731-21532572 Arabidopsis thaliana
AT3G58140 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21527731-21529730 Arabidopsis thaliana
AT3G58140 5.0kb upstream 5.0kb upstream 7842 true Chr3: 21529731-21537572 Arabidopsis thaliana
AT3G58140 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21532573-21537572 Arabidopsis thaliana
AT3G58140 5.0kb downstream 5.0kb downstream 7842 true Chr3: 21524731-21532572 Arabidopsis thaliana
AT3G58140 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21524731-21529730 Arabidopsis thaliana
AT3G58140 10.0kb upstream 10.0kb upstream 12842 true Chr3: 21529731-21542572 Arabidopsis thaliana
AT3G58140 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21532573-21542572 Arabidopsis thaliana
AT3G58140 10.0kb downstream 10.0kb downstream 12842 true Chr3: 21519731-21532572 Arabidopsis thaliana
AT3G58140 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21519731-21529730 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372588 5261 Brassicaceae View MSA
123835856 5264 Brassicales-Malvales View MSA
124342461 5266 SBM View MSA
124250092 5268 Malvidae View MSA
124068878 5270 Rosid View MSA
123737426 5271 Pentapetalae View MSA
122793122 5272 Eudicot View MSA
122044413 5273 Angiosperm View MSA
121344364 5274 Embryophyte View MSA
123424081 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.889     High  
cufflinks 10.165        
cufflinks 55.779     High High
cufflinks 10.782        
cufflinks 47.874     High  
cufflinks 10.556        

0 Strain