Gene : AT3G50940 A. thaliana TAIR10
Defline:  (1 of 2) PTHR23070//PTHR23070:SF24 - BCS1 AAA-TYPE ATPASE // SUBFAMILY NOT NAMED Genomic Order:  4110
Name:  ? AT3G50940 Secondary Identifier:  ? PAC:19660807
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G50940 0.5kb upstream 0.5kb upstream 2349 true Chr3: 18933263-18935611 Arabidopsis thaliana
AT3G50940 0.5kb upstream 0.5kb upstream 500 false Chr3: 18933263-18933762 Arabidopsis thaliana
AT3G50940 0.5kb downstream 0.5kb downstream 2349 true Chr3: 18933763-18936111 Arabidopsis thaliana
AT3G50940 0.5kb downstream 0.5kb downstream 500 false Chr3: 18935612-18936111 Arabidopsis thaliana
AT3G50940 1.0kb upstream 1.0kb upstream 2849 true Chr3: 18932763-18935611 Arabidopsis thaliana
AT3G50940 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18932763-18933762 Arabidopsis thaliana
AT3G50940 1.0kb downstream 1.0kb downstream 2849 true Chr3: 18933763-18936611 Arabidopsis thaliana
AT3G50940 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18935612-18936611 Arabidopsis thaliana
AT3G50940 2.0kb upstream 2.0kb upstream 3849 true Chr3: 18931763-18935611 Arabidopsis thaliana
AT3G50940 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18931763-18933762 Arabidopsis thaliana
AT3G50940 2.0kb downstream 2.0kb downstream 3849 true Chr3: 18933763-18937611 Arabidopsis thaliana
AT3G50940 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18935612-18937611 Arabidopsis thaliana
AT3G50940 5.0kb upstream 5.0kb upstream 6849 true Chr3: 18928763-18935611 Arabidopsis thaliana
AT3G50940 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18928763-18933762 Arabidopsis thaliana
AT3G50940 5.0kb downstream 5.0kb downstream 6849 true Chr3: 18933763-18940611 Arabidopsis thaliana
AT3G50940 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18935612-18940611 Arabidopsis thaliana
AT3G50940 10.0kb upstream 10.0kb upstream 11849 true Chr3: 18923763-18935611 Arabidopsis thaliana
AT3G50940 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18923763-18933762 Arabidopsis thaliana
AT3G50940 10.0kb downstream 10.0kb downstream 11849 true Chr3: 18933763-18945611 Arabidopsis thaliana
AT3G50940 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18935612-18945611 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363071 5261 Brassicaceae View MSA
123798470 5264 Brassicales-Malvales View MSA
124296101 5266 SBM View MSA
124148353 5268 Malvidae View MSA
123874363 5270 Rosid View MSA
123747421 5271 Pentapetalae View MSA
122795594 5272 Eudicot View MSA
122041675 5273 Angiosperm View MSA
121352297 5274 Embryophyte View MSA
123428466 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.266     Low High
cufflinks 0.082     Low  
cufflinks 0.153     Low  
cufflinks 0.096     Low  
cufflinks 0.268       High
cufflinks 0.034     Low Low

0 Strain