Gene : AT3G50920 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11247//PTHR11247:SF25 - PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 // LIPID PHOSPHATE PHOSPHATASE EPSILON 1, CHLOROPLASTIC-RELATED Genomic Order:  4107
Name:  ? AT3G50920 Secondary Identifier:  ? PAC:19664134
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRIGLSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G50920 0.5kb upstream 0.5kb upstream 1845 true Chr3: 18922372-18924216 Arabidopsis thaliana
AT3G50920 0.5kb upstream 0.5kb upstream 500 false Chr3: 18923717-18924216 Arabidopsis thaliana
AT3G50920 0.5kb downstream 0.5kb downstream 1845 true Chr3: 18921872-18923716 Arabidopsis thaliana
AT3G50920 0.5kb downstream 0.5kb downstream 500 false Chr3: 18921872-18922371 Arabidopsis thaliana
AT3G50920 1.0kb upstream 1.0kb upstream 2345 true Chr3: 18922372-18924716 Arabidopsis thaliana
AT3G50920 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18923717-18924716 Arabidopsis thaliana
AT3G50920 1.0kb downstream 1.0kb downstream 2345 true Chr3: 18921372-18923716 Arabidopsis thaliana
AT3G50920 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18921372-18922371 Arabidopsis thaliana
AT3G50920 2.0kb upstream 2.0kb upstream 3345 true Chr3: 18922372-18925716 Arabidopsis thaliana
AT3G50920 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18923717-18925716 Arabidopsis thaliana
AT3G50920 2.0kb downstream 2.0kb downstream 3345 true Chr3: 18920372-18923716 Arabidopsis thaliana
AT3G50920 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18920372-18922371 Arabidopsis thaliana
AT3G50920 5.0kb upstream 5.0kb upstream 6345 true Chr3: 18922372-18928716 Arabidopsis thaliana
AT3G50920 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18923717-18928716 Arabidopsis thaliana
AT3G50920 5.0kb downstream 5.0kb downstream 6345 true Chr3: 18917372-18923716 Arabidopsis thaliana
AT3G50920 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18917372-18922371 Arabidopsis thaliana
AT3G50920 10.0kb upstream 10.0kb upstream 11345 true Chr3: 18922372-18933716 Arabidopsis thaliana
AT3G50920 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18923717-18933716 Arabidopsis thaliana
AT3G50920 10.0kb downstream 10.0kb downstream 11345 true Chr3: 18912372-18923716 Arabidopsis thaliana
AT3G50920 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18912372-18922371 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381312 5261 Brassicaceae View MSA
123838864 5264 Brassicales-Malvales View MSA
124340744 5266 SBM View MSA
124241187 5268 Malvidae View MSA
124066688 5270 Rosid View MSA
123737697 5271 Pentapetalae View MSA
122792032 5272 Eudicot View MSA
122049888 5273 Angiosperm View MSA
121311632 5274 Embryophyte View MSA
123426780 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.755       High
cufflinks 3.608        
cufflinks 5.357        
cufflinks 4.094        
cufflinks 5.686        
cufflinks 3.465        

0 Strain