Gene : MNP A. thaliana TAIR10
Primary Identifier:  ? AT3G50870 Defline:  (1 of 3) PTHR10071//PTHR10071:SF156 - TRANSCRIPTION FACTOR GATA GATA BINDING FACTOR // GATA TRANSCRIPTION FACTOR 18-RELATED
Genomic Order:  4102 Name:  ? AT3G50870
Secondary Identifier:  ? PAC:19658408
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Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G50870 0.5kb upstream 0.5kb upstream 2119 true Chr3: 18910490-18912608 Arabidopsis thaliana
AT3G50870 0.5kb upstream 0.5kb upstream 500 false Chr3: 18910490-18910989 Arabidopsis thaliana
AT3G50870 0.5kb downstream 0.5kb downstream 2119 true Chr3: 18910990-18913108 Arabidopsis thaliana
AT3G50870 0.5kb downstream 0.5kb downstream 500 false Chr3: 18912609-18913108 Arabidopsis thaliana
AT3G50870 1.0kb upstream 1.0kb upstream 2619 true Chr3: 18909990-18912608 Arabidopsis thaliana
AT3G50870 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18909990-18910989 Arabidopsis thaliana
AT3G50870 1.0kb downstream 1.0kb downstream 2619 true Chr3: 18910990-18913608 Arabidopsis thaliana
AT3G50870 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18912609-18913608 Arabidopsis thaliana
AT3G50870 2.0kb upstream 2.0kb upstream 3619 true Chr3: 18908990-18912608 Arabidopsis thaliana
AT3G50870 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18908990-18910989 Arabidopsis thaliana
AT3G50870 2.0kb downstream 2.0kb downstream 3619 true Chr3: 18910990-18914608 Arabidopsis thaliana
AT3G50870 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18912609-18914608 Arabidopsis thaliana
AT3G50870 5.0kb upstream 5.0kb upstream 6619 true Chr3: 18905990-18912608 Arabidopsis thaliana
AT3G50870 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18905990-18910989 Arabidopsis thaliana
AT3G50870 5.0kb downstream 5.0kb downstream 6619 true Chr3: 18910990-18917608 Arabidopsis thaliana
AT3G50870 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18912609-18917608 Arabidopsis thaliana
AT3G50870 10.0kb upstream 10.0kb upstream 11619 true Chr3: 18900990-18912608 Arabidopsis thaliana
AT3G50870 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18900990-18910989 Arabidopsis thaliana
AT3G50870 10.0kb downstream 10.0kb downstream 11619 true Chr3: 18910990-18922608 Arabidopsis thaliana
AT3G50870 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18912609-18922608 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366394 5261 Brassicaceae View MSA
123834423 5264 Brassicales-Malvales View MSA
124345355 5266 SBM View MSA
124251323 5268 Malvidae View MSA
124065468 5270 Rosid View MSA
123741718 5271 Pentapetalae View MSA
122796312 5272 Eudicot View MSA
122046709 5273 Angiosperm View MSA
121350500 5274 Embryophyte View MSA
123428177 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.525        
cufflinks 0.823        
cufflinks 0.309        
cufflinks 1.244        
cufflinks 0.241     Low Low
cufflinks 1.458       High

0 Strain