Gene : AT3G50380 A. thaliana TAIR10
Defline:  (1 of 1) PTHR16166//PTHR16166:SF98 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 // SUBFAMILY NOT NAMED Genomic Order:  4047
Name:  ? AT3G50380 Secondary Identifier:  ? PAC:19664928
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G50380 0.5kb upstream 0.5kb upstream 14591 true Chr3: 18686443-18701033 Arabidopsis thaliana
AT3G50380 0.5kb upstream 0.5kb upstream 500 false Chr3: 18700534-18701033 Arabidopsis thaliana
AT3G50380 0.5kb downstream 0.5kb downstream 14591 true Chr3: 18685943-18700533 Arabidopsis thaliana
AT3G50380 0.5kb downstream 0.5kb downstream 500 false Chr3: 18685943-18686442 Arabidopsis thaliana
AT3G50380 1.0kb upstream 1.0kb upstream 15091 true Chr3: 18686443-18701533 Arabidopsis thaliana
AT3G50380 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18700534-18701533 Arabidopsis thaliana
AT3G50380 1.0kb downstream 1.0kb downstream 15091 true Chr3: 18685443-18700533 Arabidopsis thaliana
AT3G50380 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18685443-18686442 Arabidopsis thaliana
AT3G50380 2.0kb upstream 2.0kb upstream 16091 true Chr3: 18686443-18702533 Arabidopsis thaliana
AT3G50380 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18700534-18702533 Arabidopsis thaliana
AT3G50380 2.0kb downstream 2.0kb downstream 16091 true Chr3: 18684443-18700533 Arabidopsis thaliana
AT3G50380 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18684443-18686442 Arabidopsis thaliana
AT3G50380 5.0kb upstream 5.0kb upstream 19091 true Chr3: 18686443-18705533 Arabidopsis thaliana
AT3G50380 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18700534-18705533 Arabidopsis thaliana
AT3G50380 5.0kb downstream 5.0kb downstream 19091 true Chr3: 18681443-18700533 Arabidopsis thaliana
AT3G50380 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18681443-18686442 Arabidopsis thaliana
AT3G50380 10.0kb upstream 10.0kb upstream 24091 true Chr3: 18686443-18710533 Arabidopsis thaliana
AT3G50380 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18700534-18710533 Arabidopsis thaliana
AT3G50380 10.0kb downstream 10.0kb downstream 24091 true Chr3: 18676443-18700533 Arabidopsis thaliana
AT3G50380 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18676443-18686442 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360388 5261 Brassicaceae View MSA
123830490 5264 Brassicales-Malvales View MSA
124337349 5266 SBM View MSA
124238186 5268 Malvidae View MSA
124073517 5270 Rosid View MSA
123745544 5271 Pentapetalae View MSA
122793580 5272 Eudicot View MSA
122042840 5273 Angiosperm View MSA
121343832 5274 Embryophyte View MSA
123379927 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.076        
cufflinks 7.385       High
cufflinks 5.531       Low
cufflinks 7.165        
cufflinks 5.636       Low
cufflinks 6.696        

0 Strain