Gene : AT3G49601 A. thaliana TAIR10
Defline:  (1 of 1) PTHR32093:SF13 - SERINE/ARGININE REPETITIVE MATRIX PROTEIN 2 Genomic Order:  3960
Name:  ? AT3G49601 Secondary Identifier:  ? PAC:19659949
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G49601 0.5kb upstream 0.5kb upstream 2763 true Chr3: 18387302-18390064 Arabidopsis thaliana
AT3G49601 0.5kb upstream 0.5kb upstream 500 false Chr3: 18389565-18390064 Arabidopsis thaliana
AT3G49601 0.5kb downstream 0.5kb downstream 2763 true Chr3: 18386802-18389564 Arabidopsis thaliana
AT3G49601 0.5kb downstream 0.5kb downstream 500 false Chr3: 18386802-18387301 Arabidopsis thaliana
AT3G49601 1.0kb upstream 1.0kb upstream 3263 true Chr3: 18387302-18390564 Arabidopsis thaliana
AT3G49601 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18389565-18390564 Arabidopsis thaliana
AT3G49601 1.0kb downstream 1.0kb downstream 3263 true Chr3: 18386302-18389564 Arabidopsis thaliana
AT3G49601 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18386302-18387301 Arabidopsis thaliana
AT3G49601 2.0kb upstream 2.0kb upstream 4263 true Chr3: 18387302-18391564 Arabidopsis thaliana
AT3G49601 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18389565-18391564 Arabidopsis thaliana
AT3G49601 2.0kb downstream 2.0kb downstream 4263 true Chr3: 18385302-18389564 Arabidopsis thaliana
AT3G49601 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18385302-18387301 Arabidopsis thaliana
AT3G49601 5.0kb upstream 5.0kb upstream 7263 true Chr3: 18387302-18394564 Arabidopsis thaliana
AT3G49601 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18389565-18394564 Arabidopsis thaliana
AT3G49601 5.0kb downstream 5.0kb downstream 7263 true Chr3: 18382302-18389564 Arabidopsis thaliana
AT3G49601 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18382302-18387301 Arabidopsis thaliana
AT3G49601 10.0kb upstream 10.0kb upstream 12263 true Chr3: 18387302-18399564 Arabidopsis thaliana
AT3G49601 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18389565-18399564 Arabidopsis thaliana
AT3G49601 10.0kb downstream 10.0kb downstream 12263 true Chr3: 18377302-18389564 Arabidopsis thaliana
AT3G49601 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18377302-18387301 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361644 5261 Brassicaceae View MSA
123836157 5264 Brassicales-Malvales View MSA
124337693 5266 SBM View MSA
124244052 5268 Malvidae View MSA
124069039 5270 Rosid View MSA
123741456 5271 Pentapetalae View MSA
122788906 5272 Eudicot View MSA
122043009 5273 Angiosperm View MSA
121350185 5274 Embryophyte View MSA
123426025 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.739     High  
cufflinks 28.655        
cufflinks 25.39       Low
cufflinks 34.447     High High
cufflinks 29.252     High  
cufflinks 31.776     High  

0 Strain