Gene : AT3G49220 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31707:SF8 - PECTINESTERASE/PECTINESTERASE INHIBITOR 34-RELATED Genomic Order:  3919
Name:  ? AT3G49220 Secondary Identifier:  ? PAC:19663876
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G49220 0.5kb upstream 0.5kb upstream 4564 true Chr3: 18249276-18253839 Arabidopsis thaliana
AT3G49220 0.5kb upstream 0.5kb upstream 500 false Chr3: 18249276-18249775 Arabidopsis thaliana
AT3G49220 0.5kb downstream 0.5kb downstream 4564 true Chr3: 18249776-18254339 Arabidopsis thaliana
AT3G49220 0.5kb downstream 0.5kb downstream 500 false Chr3: 18253840-18254339 Arabidopsis thaliana
AT3G49220 1.0kb upstream 1.0kb upstream 5064 true Chr3: 18248776-18253839 Arabidopsis thaliana
AT3G49220 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18248776-18249775 Arabidopsis thaliana
AT3G49220 1.0kb downstream 1.0kb downstream 5064 true Chr3: 18249776-18254839 Arabidopsis thaliana
AT3G49220 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18253840-18254839 Arabidopsis thaliana
AT3G49220 2.0kb upstream 2.0kb upstream 6064 true Chr3: 18247776-18253839 Arabidopsis thaliana
AT3G49220 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18247776-18249775 Arabidopsis thaliana
AT3G49220 2.0kb downstream 2.0kb downstream 6064 true Chr3: 18249776-18255839 Arabidopsis thaliana
AT3G49220 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18253840-18255839 Arabidopsis thaliana
AT3G49220 5.0kb upstream 5.0kb upstream 9064 true Chr3: 18244776-18253839 Arabidopsis thaliana
AT3G49220 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18244776-18249775 Arabidopsis thaliana
AT3G49220 5.0kb downstream 5.0kb downstream 9064 true Chr3: 18249776-18258839 Arabidopsis thaliana
AT3G49220 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18253840-18258839 Arabidopsis thaliana
AT3G49220 10.0kb upstream 10.0kb upstream 14064 true Chr3: 18239776-18253839 Arabidopsis thaliana
AT3G49220 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18239776-18249775 Arabidopsis thaliana
AT3G49220 10.0kb downstream 10.0kb downstream 14064 true Chr3: 18249776-18263839 Arabidopsis thaliana
AT3G49220 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18253840-18263839 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381406 5261 Brassicaceae View MSA
123838000 5264 Brassicales-Malvales View MSA
124337628 5266 SBM View MSA
124239188 5268 Malvidae View MSA
124065220 5270 Rosid View MSA
123746199 5271 Pentapetalae View MSA
122794152 5272 Eudicot View MSA
122043800 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.371        
cufflinks 40.253     High  
cufflinks 16.362        
cufflinks 27.773        
cufflinks 13.409       Low
cufflinks 44.336     High High

0 Strain