Gene : emb1796 A. thaliana TAIR10
Primary Identifier:  ? AT3G49240 Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2)
Genomic Order:  3921 Name:  ? AT3G49240
Secondary Identifier:  ? PAC:19661015
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G49240 0.5kb upstream 0.5kb upstream 2622 true Chr3: 18255479-18258100 Arabidopsis thaliana
AT3G49240 0.5kb upstream 0.5kb upstream 500 false Chr3: 18255479-18255978 Arabidopsis thaliana
AT3G49240 0.5kb downstream 0.5kb downstream 2622 true Chr3: 18255979-18258600 Arabidopsis thaliana
AT3G49240 0.5kb downstream 0.5kb downstream 500 false Chr3: 18258101-18258600 Arabidopsis thaliana
AT3G49240 1.0kb upstream 1.0kb upstream 3122 true Chr3: 18254979-18258100 Arabidopsis thaliana
AT3G49240 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18254979-18255978 Arabidopsis thaliana
AT3G49240 1.0kb downstream 1.0kb downstream 3122 true Chr3: 18255979-18259100 Arabidopsis thaliana
AT3G49240 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18258101-18259100 Arabidopsis thaliana
AT3G49240 2.0kb upstream 2.0kb upstream 4122 true Chr3: 18253979-18258100 Arabidopsis thaliana
AT3G49240 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18253979-18255978 Arabidopsis thaliana
AT3G49240 2.0kb downstream 2.0kb downstream 4122 true Chr3: 18255979-18260100 Arabidopsis thaliana
AT3G49240 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18258101-18260100 Arabidopsis thaliana
AT3G49240 5.0kb upstream 5.0kb upstream 7122 true Chr3: 18250979-18258100 Arabidopsis thaliana
AT3G49240 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18250979-18255978 Arabidopsis thaliana
AT3G49240 5.0kb downstream 5.0kb downstream 7122 true Chr3: 18255979-18263100 Arabidopsis thaliana
AT3G49240 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18258101-18263100 Arabidopsis thaliana
AT3G49240 10.0kb upstream 10.0kb upstream 12122 true Chr3: 18245979-18258100 Arabidopsis thaliana
AT3G49240 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18245979-18255978 Arabidopsis thaliana
AT3G49240 10.0kb downstream 10.0kb downstream 12122 true Chr3: 18255979-18268100 Arabidopsis thaliana
AT3G49240 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18258101-18268100 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363346 5261 Brassicaceae View MSA
123830662 5264 Brassicales-Malvales View MSA
124345517 5266 SBM View MSA
124252608 5268 Malvidae View MSA
124060522 5270 Rosid View MSA
123738847 5271 Pentapetalae View MSA
122790244 5272 Eudicot View MSA
122041559 5273 Angiosperm View MSA
121309863 5274 Embryophyte View MSA
123347506 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.326       High
cufflinks 8.954        
cufflinks 10.1        
cufflinks 10.455        
cufflinks 7.651       Low
cufflinks 12.866       High

0 Strain