Gene : AT3G49140 A. thaliana TAIR10
Defline:  (1 of 2) PTHR13343:SF13 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-LIKE PROTEIN Genomic Order:  3910
Name:  ? AT3G49140 Secondary Identifier:  ? PAC:19658988
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G49140 0.5kb upstream 0.5kb upstream 4257 true Chr3: 18211863-18216119 Arabidopsis thaliana
AT3G49140 0.5kb upstream 0.5kb upstream 500 false Chr3: 18215620-18216119 Arabidopsis thaliana
AT3G49140 0.5kb downstream 0.5kb downstream 4257 true Chr3: 18211363-18215619 Arabidopsis thaliana
AT3G49140 0.5kb downstream 0.5kb downstream 500 false Chr3: 18211363-18211862 Arabidopsis thaliana
AT3G49140 1.0kb upstream 1.0kb upstream 4757 true Chr3: 18211863-18216619 Arabidopsis thaliana
AT3G49140 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18215620-18216619 Arabidopsis thaliana
AT3G49140 1.0kb downstream 1.0kb downstream 4757 true Chr3: 18210863-18215619 Arabidopsis thaliana
AT3G49140 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18210863-18211862 Arabidopsis thaliana
AT3G49140 2.0kb upstream 2.0kb upstream 5757 true Chr3: 18211863-18217619 Arabidopsis thaliana
AT3G49140 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18215620-18217619 Arabidopsis thaliana
AT3G49140 2.0kb downstream 2.0kb downstream 5757 true Chr3: 18209863-18215619 Arabidopsis thaliana
AT3G49140 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18209863-18211862 Arabidopsis thaliana
AT3G49140 5.0kb upstream 5.0kb upstream 8757 true Chr3: 18211863-18220619 Arabidopsis thaliana
AT3G49140 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18215620-18220619 Arabidopsis thaliana
AT3G49140 5.0kb downstream 5.0kb downstream 8757 true Chr3: 18206863-18215619 Arabidopsis thaliana
AT3G49140 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18206863-18211862 Arabidopsis thaliana
AT3G49140 10.0kb upstream 10.0kb upstream 13757 true Chr3: 18211863-18225619 Arabidopsis thaliana
AT3G49140 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18215620-18225619 Arabidopsis thaliana
AT3G49140 10.0kb downstream 10.0kb downstream 13757 true Chr3: 18201863-18215619 Arabidopsis thaliana
AT3G49140 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18201863-18211862 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378388 5261 Brassicaceae View MSA
123836782 5264 Brassicales-Malvales View MSA
124341056 5266 SBM View MSA
124252927 5268 Malvidae View MSA
124066138 5270 Rosid View MSA
123741710 5271 Pentapetalae View MSA
122789997 5272 Eudicot View MSA
122050575 5273 Angiosperm View MSA
121348228 5274 Embryophyte View MSA
123380781 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.025        
cufflinks 8.969        
cufflinks 30.009     High High
cufflinks 9.163        
cufflinks 24.927        
cufflinks 5.924       Low

0 Strain