Gene : AT3G49070 A. thaliana TAIR10
Defline:  (1 of 16) PF05055 - Protein of unknown function (DUF677) (DUF677) Genomic Order:  3903
Name:  ? AT3G49070 Secondary Identifier:  ? PAC:19661096
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G49070 0.5kb upstream 0.5kb upstream 1751 true Chr3: 18192479-18194229 Arabidopsis thaliana
AT3G49070 0.5kb upstream 0.5kb upstream 500 false Chr3: 18193730-18194229 Arabidopsis thaliana
AT3G49070 0.5kb downstream 0.5kb downstream 1751 true Chr3: 18191979-18193729 Arabidopsis thaliana
AT3G49070 0.5kb downstream 0.5kb downstream 500 false Chr3: 18191979-18192478 Arabidopsis thaliana
AT3G49070 1.0kb upstream 1.0kb upstream 2251 true Chr3: 18192479-18194729 Arabidopsis thaliana
AT3G49070 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18193730-18194729 Arabidopsis thaliana
AT3G49070 1.0kb downstream 1.0kb downstream 2251 true Chr3: 18191479-18193729 Arabidopsis thaliana
AT3G49070 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18191479-18192478 Arabidopsis thaliana
AT3G49070 2.0kb upstream 2.0kb upstream 3251 true Chr3: 18192479-18195729 Arabidopsis thaliana
AT3G49070 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18193730-18195729 Arabidopsis thaliana
AT3G49070 2.0kb downstream 2.0kb downstream 3251 true Chr3: 18190479-18193729 Arabidopsis thaliana
AT3G49070 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18190479-18192478 Arabidopsis thaliana
AT3G49070 5.0kb upstream 5.0kb upstream 6251 true Chr3: 18192479-18198729 Arabidopsis thaliana
AT3G49070 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18193730-18198729 Arabidopsis thaliana
AT3G49070 5.0kb downstream 5.0kb downstream 6251 true Chr3: 18187479-18193729 Arabidopsis thaliana
AT3G49070 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18187479-18192478 Arabidopsis thaliana
AT3G49070 10.0kb upstream 10.0kb upstream 11251 true Chr3: 18192479-18203729 Arabidopsis thaliana
AT3G49070 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18193730-18203729 Arabidopsis thaliana
AT3G49070 10.0kb downstream 10.0kb downstream 11251 true Chr3: 18182479-18193729 Arabidopsis thaliana
AT3G49070 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18182479-18192478 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371233 5261 Brassicaceae View MSA
123836492 5264 Brassicales-Malvales View MSA
124340431 5266 SBM View MSA
124240755 5268 Malvidae View MSA
124070195 5270 Rosid View MSA
123749036 5271 Pentapetalae View MSA
122795133 5272 Eudicot View MSA
122051174 5273 Angiosperm View MSA
121347879 5274 Embryophyte View MSA
123380662 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.562        
cufflinks 1.364        
cufflinks 0.424        
cufflinks 2.125        
cufflinks 0.386       Low
cufflinks 3.651       High

0 Strain