Gene : CSR1 A. thaliana TAIR10
Primary Identifier:  ? AT3G48560 Defline:  (1 of 1) K01652 - acetolactate synthase I/II/III large subunit (E2.2.1.6L, ilvB, ilvG, ilvI)
Genomic Order:  3851 Name:  ? AT3G48560
Secondary Identifier:  ? PAC:19662827
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Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana BRANCHED-CHAIN-AA-SYN-PWY Arabidopsis thaliana pathologic  
Athaliana ILEUSYN-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-3001 Arabidopsis thaliana pathologic  
Athaliana VALSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48560 0.5kb upstream 0.5kb upstream 2770 true Chr3: 18001312-18004081 Arabidopsis thaliana
AT3G48560 0.5kb upstream 0.5kb upstream 500 false Chr3: 18003582-18004081 Arabidopsis thaliana
AT3G48560 0.5kb downstream 0.5kb downstream 2770 true Chr3: 18000812-18003581 Arabidopsis thaliana
AT3G48560 0.5kb downstream 0.5kb downstream 500 false Chr3: 18000812-18001311 Arabidopsis thaliana
AT3G48560 1.0kb upstream 1.0kb upstream 3270 true Chr3: 18001312-18004581 Arabidopsis thaliana
AT3G48560 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18003582-18004581 Arabidopsis thaliana
AT3G48560 1.0kb downstream 1.0kb downstream 3270 true Chr3: 18000312-18003581 Arabidopsis thaliana
AT3G48560 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18000312-18001311 Arabidopsis thaliana
AT3G48560 2.0kb upstream 2.0kb upstream 4270 true Chr3: 18001312-18005581 Arabidopsis thaliana
AT3G48560 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18003582-18005581 Arabidopsis thaliana
AT3G48560 2.0kb downstream 2.0kb downstream 4270 true Chr3: 17999312-18003581 Arabidopsis thaliana
AT3G48560 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17999312-18001311 Arabidopsis thaliana
AT3G48560 5.0kb upstream 5.0kb upstream 7270 true Chr3: 18001312-18008581 Arabidopsis thaliana
AT3G48560 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18003582-18008581 Arabidopsis thaliana
AT3G48560 5.0kb downstream 5.0kb downstream 7270 true Chr3: 17996312-18003581 Arabidopsis thaliana
AT3G48560 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17996312-18001311 Arabidopsis thaliana
AT3G48560 10.0kb upstream 10.0kb upstream 12270 true Chr3: 18001312-18013581 Arabidopsis thaliana
AT3G48560 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18003582-18013581 Arabidopsis thaliana
AT3G48560 10.0kb downstream 10.0kb downstream 12270 true Chr3: 17991312-18003581 Arabidopsis thaliana
AT3G48560 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17991312-18001311 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372690 5261 Brassicaceae View MSA
123838069 5264 Brassicales-Malvales View MSA
124338702 5266 SBM View MSA
124237880 5268 Malvidae View MSA
124061754 5270 Rosid View MSA
123740157 5271 Pentapetalae View MSA
122787294 5272 Eudicot View MSA
122042643 5273 Angiosperm View MSA
121346996 5274 Embryophyte View MSA
123424213 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 132.297     High  
cufflinks 86.461     High  
cufflinks 151.588     High High
cufflinks 87.259     High  
cufflinks 131.723     High  
cufflinks 85.327     High  

0 Strain