Gene : AT3G48740 A. thaliana TAIR10
Defline:  (1 of 4) PTHR10791//PTHR10791:SF65 - RAG1-ACTIVATING PROTEIN 1 // BIDIRECTIONAL SUGAR TRANSPORTER SWEET11-RELATED Genomic Order:  3869
Name:  ? AT3G48740 Secondary Identifier:  ? PAC:19662242
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48740 0.5kb upstream 0.5kb upstream 2790 true Chr3: 18052466-18055255 Arabidopsis thaliana
AT3G48740 0.5kb upstream 0.5kb upstream 500 false Chr3: 18054756-18055255 Arabidopsis thaliana
AT3G48740 0.5kb downstream 0.5kb downstream 2790 true Chr3: 18051966-18054755 Arabidopsis thaliana
AT3G48740 0.5kb downstream 0.5kb downstream 500 false Chr3: 18051966-18052465 Arabidopsis thaliana
AT3G48740 1.0kb upstream 1.0kb upstream 3290 true Chr3: 18052466-18055755 Arabidopsis thaliana
AT3G48740 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18054756-18055755 Arabidopsis thaliana
AT3G48740 1.0kb downstream 1.0kb downstream 3290 true Chr3: 18051466-18054755 Arabidopsis thaliana
AT3G48740 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18051466-18052465 Arabidopsis thaliana
AT3G48740 2.0kb upstream 2.0kb upstream 4290 true Chr3: 18052466-18056755 Arabidopsis thaliana
AT3G48740 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18054756-18056755 Arabidopsis thaliana
AT3G48740 2.0kb downstream 2.0kb downstream 4290 true Chr3: 18050466-18054755 Arabidopsis thaliana
AT3G48740 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18050466-18052465 Arabidopsis thaliana
AT3G48740 5.0kb upstream 5.0kb upstream 7290 true Chr3: 18052466-18059755 Arabidopsis thaliana
AT3G48740 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18054756-18059755 Arabidopsis thaliana
AT3G48740 5.0kb downstream 5.0kb downstream 7290 true Chr3: 18047466-18054755 Arabidopsis thaliana
AT3G48740 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18047466-18052465 Arabidopsis thaliana
AT3G48740 10.0kb upstream 10.0kb upstream 12290 true Chr3: 18052466-18064755 Arabidopsis thaliana
AT3G48740 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18054756-18064755 Arabidopsis thaliana
AT3G48740 10.0kb downstream 10.0kb downstream 12290 true Chr3: 18042466-18054755 Arabidopsis thaliana
AT3G48740 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18042466-18052465 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363078 5261 Brassicaceae View MSA
123839658 5264 Brassicales-Malvales View MSA
124342506 5266 SBM View MSA
124253102 5268 Malvidae View MSA
124071404 5270 Rosid View MSA
123751761 5271 Pentapetalae View MSA
122795579 5272 Eudicot View MSA
122043029 5273 Angiosperm View MSA
121310066 5274 Embryophyte View MSA
123428840 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 64.102     High  
cufflinks 0.06     Low Low
cufflinks 83.767     High  
cufflinks 0.358     Low  
cufflinks 81.303     High  
cufflinks 0.375        

0 Strain