Gene : AT3G48450 A. thaliana TAIR10
Defline:  (1 of 2) PTHR33159:SF4 - RPM1-INTERACTING PROTEIN 4 FAMILY PROTEIN Genomic Order:  3840
Name:  ? AT3G48450 Secondary Identifier:  ? PAC:19658761
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48450 0.5kb upstream 0.5kb upstream 1360 true Chr3: 17944029-17945388 Arabidopsis thaliana
AT3G48450 0.5kb upstream 0.5kb upstream 500 false Chr3: 17944889-17945388 Arabidopsis thaliana
AT3G48450 0.5kb downstream 0.5kb downstream 1360 true Chr3: 17943529-17944888 Arabidopsis thaliana
AT3G48450 0.5kb downstream 0.5kb downstream 500 false Chr3: 17943529-17944028 Arabidopsis thaliana
AT3G48450 1.0kb upstream 1.0kb upstream 1860 true Chr3: 17944029-17945888 Arabidopsis thaliana
AT3G48450 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17944889-17945888 Arabidopsis thaliana
AT3G48450 1.0kb downstream 1.0kb downstream 1860 true Chr3: 17943029-17944888 Arabidopsis thaliana
AT3G48450 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17943029-17944028 Arabidopsis thaliana
AT3G48450 2.0kb upstream 2.0kb upstream 2860 true Chr3: 17944029-17946888 Arabidopsis thaliana
AT3G48450 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17944889-17946888 Arabidopsis thaliana
AT3G48450 2.0kb downstream 2.0kb downstream 2860 true Chr3: 17942029-17944888 Arabidopsis thaliana
AT3G48450 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17942029-17944028 Arabidopsis thaliana
AT3G48450 5.0kb upstream 5.0kb upstream 5860 true Chr3: 17944029-17949888 Arabidopsis thaliana
AT3G48450 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17944889-17949888 Arabidopsis thaliana
AT3G48450 5.0kb downstream 5.0kb downstream 5860 true Chr3: 17939029-17944888 Arabidopsis thaliana
AT3G48450 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17939029-17944028 Arabidopsis thaliana
AT3G48450 10.0kb upstream 10.0kb upstream 10860 true Chr3: 17944029-17954888 Arabidopsis thaliana
AT3G48450 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17944889-17954888 Arabidopsis thaliana
AT3G48450 10.0kb downstream 10.0kb downstream 10860 true Chr3: 17934029-17944888 Arabidopsis thaliana
AT3G48450 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17934029-17944028 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378334 5261 Brassicaceae View MSA
123841175 5264 Brassicales-Malvales View MSA
124322863 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.215     Low  
cufflinks 20.368        
cufflinks 0.196     Low Low
cufflinks 19.844        
cufflinks 0.406        
cufflinks 26.079        

0 Strain