Gene : AT3G48480 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12606//PTHR12606:SF38 - SENTRIN/SUMO-SPECIFIC PROTEASE // SUBFAMILY NOT NAMED Genomic Order:  3843
Name:  ? AT3G48480 Secondary Identifier:  ? PAC:19658488
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48480 0.5kb upstream 0.5kb upstream 2527 true Chr3: 17957098-17959624 Arabidopsis thaliana
AT3G48480 0.5kb upstream 0.5kb upstream 500 false Chr3: 17959125-17959624 Arabidopsis thaliana
AT3G48480 0.5kb downstream 0.5kb downstream 2527 true Chr3: 17956598-17959124 Arabidopsis thaliana
AT3G48480 0.5kb downstream 0.5kb downstream 500 false Chr3: 17956598-17957097 Arabidopsis thaliana
AT3G48480 1.0kb upstream 1.0kb upstream 3027 true Chr3: 17957098-17960124 Arabidopsis thaliana
AT3G48480 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17959125-17960124 Arabidopsis thaliana
AT3G48480 1.0kb downstream 1.0kb downstream 3027 true Chr3: 17956098-17959124 Arabidopsis thaliana
AT3G48480 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17956098-17957097 Arabidopsis thaliana
AT3G48480 2.0kb upstream 2.0kb upstream 4027 true Chr3: 17957098-17961124 Arabidopsis thaliana
AT3G48480 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17959125-17961124 Arabidopsis thaliana
AT3G48480 2.0kb downstream 2.0kb downstream 4027 true Chr3: 17955098-17959124 Arabidopsis thaliana
AT3G48480 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17955098-17957097 Arabidopsis thaliana
AT3G48480 5.0kb upstream 5.0kb upstream 7027 true Chr3: 17957098-17964124 Arabidopsis thaliana
AT3G48480 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17959125-17964124 Arabidopsis thaliana
AT3G48480 5.0kb downstream 5.0kb downstream 7027 true Chr3: 17952098-17959124 Arabidopsis thaliana
AT3G48480 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17952098-17957097 Arabidopsis thaliana
AT3G48480 10.0kb upstream 10.0kb upstream 12027 true Chr3: 17957098-17969124 Arabidopsis thaliana
AT3G48480 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17959125-17969124 Arabidopsis thaliana
AT3G48480 10.0kb downstream 10.0kb downstream 12027 true Chr3: 17947098-17959124 Arabidopsis thaliana
AT3G48480 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17947098-17957097 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378870 5261 Brassicaceae View MSA
123837012 5264 Brassicales-Malvales View MSA
124346975 5266 SBM View MSA
124247826 5268 Malvidae View MSA
124074830 5270 Rosid View MSA
123753730 5271 Pentapetalae View MSA
122794426 5272 Eudicot View MSA
122049176 5273 Angiosperm View MSA
123429184 5275 Viridiplantae View MSA
121311282 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.338        
cufflinks 0.772       High
cufflinks 0.215     Low Low
cufflinks 0.465        
cufflinks 0.216     Low Low
cufflinks 0.859       High

0 Strain