Gene : AT3G48600 A. thaliana TAIR10
Defline:  (1 of 3) PTHR13844//PTHR13844:SF12 - BRG-1 ASSOCIATED FACTOR 60 BAF60 // EXPRESSED PROTEIN-RELATED Genomic Order:  3855
Name:  ? AT3G48600 Secondary Identifier:  ? PAC:19660554
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48600 0.5kb upstream 0.5kb upstream 1848 true Chr3: 18010093-18011940 Arabidopsis thaliana
AT3G48600 0.5kb upstream 0.5kb upstream 500 false Chr3: 18011441-18011940 Arabidopsis thaliana
AT3G48600 0.5kb downstream 0.5kb downstream 1848 true Chr3: 18009593-18011440 Arabidopsis thaliana
AT3G48600 0.5kb downstream 0.5kb downstream 500 false Chr3: 18009593-18010092 Arabidopsis thaliana
AT3G48600 1.0kb upstream 1.0kb upstream 2348 true Chr3: 18010093-18012440 Arabidopsis thaliana
AT3G48600 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18011441-18012440 Arabidopsis thaliana
AT3G48600 1.0kb downstream 1.0kb downstream 2348 true Chr3: 18009093-18011440 Arabidopsis thaliana
AT3G48600 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18009093-18010092 Arabidopsis thaliana
AT3G48600 2.0kb upstream 2.0kb upstream 3348 true Chr3: 18010093-18013440 Arabidopsis thaliana
AT3G48600 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18011441-18013440 Arabidopsis thaliana
AT3G48600 2.0kb downstream 2.0kb downstream 3348 true Chr3: 18008093-18011440 Arabidopsis thaliana
AT3G48600 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18008093-18010092 Arabidopsis thaliana
AT3G48600 5.0kb upstream 5.0kb upstream 6348 true Chr3: 18010093-18016440 Arabidopsis thaliana
AT3G48600 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18011441-18016440 Arabidopsis thaliana
AT3G48600 5.0kb downstream 5.0kb downstream 6348 true Chr3: 18005093-18011440 Arabidopsis thaliana
AT3G48600 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18005093-18010092 Arabidopsis thaliana
AT3G48600 10.0kb upstream 10.0kb upstream 11348 true Chr3: 18010093-18021440 Arabidopsis thaliana
AT3G48600 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18011441-18021440 Arabidopsis thaliana
AT3G48600 10.0kb downstream 10.0kb downstream 11348 true Chr3: 18000093-18011440 Arabidopsis thaliana
AT3G48600 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18000093-18010092 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331842 5261 Brassicaceae View MSA
123772972 5264 Brassicales-Malvales View MSA
124271476 5266 SBM View MSA
124127459 5268 Malvidae View MSA
123856307 5270 Rosid View MSA
123442243 5271 Pentapetalae View MSA
122477821 5272 Eudicot View MSA
122051489 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121346122 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.477        
cufflinks 1.854       High
cufflinks 1.079       Low
cufflinks 1.484        
cufflinks 1.491        
cufflinks 1.335        

0 Strain