Gene : ATM A. thaliana TAIR10
Primary Identifier:  ? AT3G48190 Defline:  (1 of 1) K04728 - ataxia telangiectasia mutated family protein (ATM, TEL1)
Genomic Order:  3805 Name:  ? AT3G48190
Secondary Identifier:  ? PAC:19662820
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48190 0.5kb upstream 0.5kb upstream 31758 true Chr3: 17796834-17828591 Arabidopsis thaliana
AT3G48190 0.5kb upstream 0.5kb upstream 500 false Chr3: 17796834-17797333 Arabidopsis thaliana
AT3G48190 0.5kb downstream 0.5kb downstream 31758 true Chr3: 17797334-17829091 Arabidopsis thaliana
AT3G48190 0.5kb downstream 0.5kb downstream 500 false Chr3: 17828592-17829091 Arabidopsis thaliana
AT3G48190 1.0kb upstream 1.0kb upstream 32258 true Chr3: 17796334-17828591 Arabidopsis thaliana
AT3G48190 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17796334-17797333 Arabidopsis thaliana
AT3G48190 1.0kb downstream 1.0kb downstream 32258 true Chr3: 17797334-17829591 Arabidopsis thaliana
AT3G48190 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17828592-17829591 Arabidopsis thaliana
AT3G48190 2.0kb upstream 2.0kb upstream 33258 true Chr3: 17795334-17828591 Arabidopsis thaliana
AT3G48190 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17795334-17797333 Arabidopsis thaliana
AT3G48190 2.0kb downstream 2.0kb downstream 33258 true Chr3: 17797334-17830591 Arabidopsis thaliana
AT3G48190 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17828592-17830591 Arabidopsis thaliana
AT3G48190 5.0kb upstream 5.0kb upstream 36258 true Chr3: 17792334-17828591 Arabidopsis thaliana
AT3G48190 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17792334-17797333 Arabidopsis thaliana
AT3G48190 5.0kb downstream 5.0kb downstream 36258 true Chr3: 17797334-17833591 Arabidopsis thaliana
AT3G48190 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17828592-17833591 Arabidopsis thaliana
AT3G48190 10.0kb upstream 10.0kb upstream 41258 true Chr3: 17787334-17828591 Arabidopsis thaliana
AT3G48190 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17787334-17797333 Arabidopsis thaliana
AT3G48190 10.0kb downstream 10.0kb downstream 41258 true Chr3: 17797334-17838591 Arabidopsis thaliana
AT3G48190 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17828592-17838591 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122791338 5272 Eudicot View MSA
122376384 5261 Brassicaceae View MSA
123836304 5264 Brassicales-Malvales View MSA
124346303 5266 SBM View MSA
124243718 5268 Malvidae View MSA
124050304 5270 Rosid View MSA
123745497 5271 Pentapetalae View MSA
122048248 5273 Angiosperm View MSA
121343788 5274 Embryophyte View MSA
123426906 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.521        
cufflinks 2.774        
cufflinks 1.33        
cufflinks 2.808        
cufflinks 1.294       Low
cufflinks 2.726        

0 Strain