Gene : AT3G48060 A. thaliana TAIR10
Defline:  (1 of 2) PTHR15141//PTHR15141:SF52 - TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3 // BAH AND TFIIS DOMAIN-CONTAINING PROTEIN Genomic Order:  3791
Name:  ? AT3G48060 Secondary Identifier:  ? PAC:19662022
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48060 0.5kb upstream 0.5kb upstream 6123 true Chr3: 17743114-17749236 Arabidopsis thaliana
AT3G48060 0.5kb upstream 0.5kb upstream 500 false Chr3: 17748737-17749236 Arabidopsis thaliana
AT3G48060 0.5kb downstream 0.5kb downstream 6123 true Chr3: 17742614-17748736 Arabidopsis thaliana
AT3G48060 0.5kb downstream 0.5kb downstream 500 false Chr3: 17742614-17743113 Arabidopsis thaliana
AT3G48060 1.0kb upstream 1.0kb upstream 6623 true Chr3: 17743114-17749736 Arabidopsis thaliana
AT3G48060 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17748737-17749736 Arabidopsis thaliana
AT3G48060 1.0kb downstream 1.0kb downstream 6623 true Chr3: 17742114-17748736 Arabidopsis thaliana
AT3G48060 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17742114-17743113 Arabidopsis thaliana
AT3G48060 2.0kb upstream 2.0kb upstream 7623 true Chr3: 17743114-17750736 Arabidopsis thaliana
AT3G48060 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17748737-17750736 Arabidopsis thaliana
AT3G48060 2.0kb downstream 2.0kb downstream 7623 true Chr3: 17741114-17748736 Arabidopsis thaliana
AT3G48060 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17741114-17743113 Arabidopsis thaliana
AT3G48060 5.0kb upstream 5.0kb upstream 10623 true Chr3: 17743114-17753736 Arabidopsis thaliana
AT3G48060 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17748737-17753736 Arabidopsis thaliana
AT3G48060 5.0kb downstream 5.0kb downstream 10623 true Chr3: 17738114-17748736 Arabidopsis thaliana
AT3G48060 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17738114-17743113 Arabidopsis thaliana
AT3G48060 10.0kb upstream 10.0kb upstream 15623 true Chr3: 17743114-17758736 Arabidopsis thaliana
AT3G48060 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17748737-17758736 Arabidopsis thaliana
AT3G48060 10.0kb downstream 10.0kb downstream 15623 true Chr3: 17733114-17748736 Arabidopsis thaliana
AT3G48060 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17733114-17743113 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375857 5261 Brassicaceae View MSA
123840447 5264 Brassicales-Malvales View MSA
124343778 5266 SBM View MSA
124250789 5268 Malvidae View MSA
124070029 5270 Rosid View MSA
123751253 5271 Pentapetalae View MSA
122792090 5272 Eudicot View MSA
122044388 5273 Angiosperm View MSA
121350650 5274 Embryophyte View MSA
123381837 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.331        
cufflinks 9.671        
cufflinks 5.962       Low
cufflinks 10.944       High
cufflinks 6.547        
cufflinks 9.419        

0 Strain