Gene : CNGC16 A. thaliana TAIR10
Primary Identifier:  ? AT3G48010 Defline:  (1 of 2) PTHR10217//PTHR10217:SF479 - VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL // CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED
Genomic Order:  3786 Name:  ? AT3G48010
Secondary Identifier:  ? PAC:19665113
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48010 0.5kb upstream 0.5kb upstream 3194 true Chr3: 17721335-17724528 Arabidopsis thaliana
AT3G48010 0.5kb upstream 0.5kb upstream 500 false Chr3: 17724029-17724528 Arabidopsis thaliana
AT3G48010 0.5kb downstream 0.5kb downstream 3194 true Chr3: 17720835-17724028 Arabidopsis thaliana
AT3G48010 0.5kb downstream 0.5kb downstream 500 false Chr3: 17720835-17721334 Arabidopsis thaliana
AT3G48010 1.0kb upstream 1.0kb upstream 3694 true Chr3: 17721335-17725028 Arabidopsis thaliana
AT3G48010 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17724029-17725028 Arabidopsis thaliana
AT3G48010 1.0kb downstream 1.0kb downstream 3694 true Chr3: 17720335-17724028 Arabidopsis thaliana
AT3G48010 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17720335-17721334 Arabidopsis thaliana
AT3G48010 2.0kb upstream 2.0kb upstream 4694 true Chr3: 17721335-17726028 Arabidopsis thaliana
AT3G48010 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17724029-17726028 Arabidopsis thaliana
AT3G48010 2.0kb downstream 2.0kb downstream 4694 true Chr3: 17719335-17724028 Arabidopsis thaliana
AT3G48010 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17719335-17721334 Arabidopsis thaliana
AT3G48010 5.0kb upstream 5.0kb upstream 7694 true Chr3: 17721335-17729028 Arabidopsis thaliana
AT3G48010 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17724029-17729028 Arabidopsis thaliana
AT3G48010 5.0kb downstream 5.0kb downstream 7694 true Chr3: 17716335-17724028 Arabidopsis thaliana
AT3G48010 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17716335-17721334 Arabidopsis thaliana
AT3G48010 10.0kb upstream 10.0kb upstream 12694 true Chr3: 17721335-17734028 Arabidopsis thaliana
AT3G48010 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17724029-17734028 Arabidopsis thaliana
AT3G48010 10.0kb downstream 10.0kb downstream 12694 true Chr3: 17711335-17724028 Arabidopsis thaliana
AT3G48010 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17711335-17721334 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041490 5273 Angiosperm View MSA
122360489 5261 Brassicaceae View MSA
123831068 5264 Brassicales-Malvales View MSA
124349304 5266 SBM View MSA
124252266 5268 Malvidae View MSA
124071726 5270 Rosid View MSA
123747107 5271 Pentapetalae View MSA
122792156 5272 Eudicot View MSA
121351754 5274 Embryophyte View MSA
123428762 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.101     Low  
cufflinks 0.209     Low  
cufflinks 0.078     Low Low
cufflinks 0.315     Low High
cufflinks 0.098     Low  
cufflinks 0.294     Low High

0 Strain