Gene : AT3G47910 A. thaliana TAIR10
Defline:  (1 of 2) KOG1867 - Ubiquitin-specific protease Genomic Order:  3776
Name:  ? AT3G47910 Secondary Identifier:  ? PAC:19660403
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G47910 0.5kb upstream 0.5kb upstream 7849 true Chr3: 17674382-17682230 Arabidopsis thaliana
AT3G47910 0.5kb upstream 0.5kb upstream 500 false Chr3: 17681731-17682230 Arabidopsis thaliana
AT3G47910 0.5kb downstream 0.5kb downstream 7849 true Chr3: 17673882-17681730 Arabidopsis thaliana
AT3G47910 0.5kb downstream 0.5kb downstream 500 false Chr3: 17673882-17674381 Arabidopsis thaliana
AT3G47910 1.0kb upstream 1.0kb upstream 8349 true Chr3: 17674382-17682730 Arabidopsis thaliana
AT3G47910 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17681731-17682730 Arabidopsis thaliana
AT3G47910 1.0kb downstream 1.0kb downstream 8349 true Chr3: 17673382-17681730 Arabidopsis thaliana
AT3G47910 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17673382-17674381 Arabidopsis thaliana
AT3G47910 2.0kb upstream 2.0kb upstream 9349 true Chr3: 17674382-17683730 Arabidopsis thaliana
AT3G47910 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17681731-17683730 Arabidopsis thaliana
AT3G47910 2.0kb downstream 2.0kb downstream 9349 true Chr3: 17672382-17681730 Arabidopsis thaliana
AT3G47910 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17672382-17674381 Arabidopsis thaliana
AT3G47910 5.0kb upstream 5.0kb upstream 12349 true Chr3: 17674382-17686730 Arabidopsis thaliana
AT3G47910 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17681731-17686730 Arabidopsis thaliana
AT3G47910 5.0kb downstream 5.0kb downstream 12349 true Chr3: 17669382-17681730 Arabidopsis thaliana
AT3G47910 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17669382-17674381 Arabidopsis thaliana
AT3G47910 10.0kb upstream 10.0kb upstream 17349 true Chr3: 17674382-17691730 Arabidopsis thaliana
AT3G47910 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17681731-17691730 Arabidopsis thaliana
AT3G47910 10.0kb downstream 10.0kb downstream 17349 true Chr3: 17664382-17681730 Arabidopsis thaliana
AT3G47910 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17664382-17674381 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376354 5261 Brassicaceae View MSA
123841591 5264 Brassicales-Malvales View MSA
124340866 5266 SBM View MSA
124252136 5268 Malvidae View MSA
124072872 5270 Rosid View MSA
123749894 5271 Pentapetalae View MSA
122797305 5272 Eudicot View MSA
122047573 5273 Angiosperm View MSA
121346745 5274 Embryophyte View MSA
123380438 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.508        
cufflinks 5.566        
cufflinks 4.805        
cufflinks 5.89        
cufflinks 4.501       Low
cufflinks 5.92        

0 Strain