Gene : AT3G47890 A. thaliana TAIR10
Defline:  (1 of 13) PTHR22975:SF9 - F6D8.33-RELATED Genomic Order:  3775
Name:  ? AT3G47890 Secondary Identifier:  ? PAC:19661502
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G47890 0.5kb upstream 0.5kb upstream 7104 true Chr3: 17666927-17674030 Arabidopsis thaliana
AT3G47890 0.5kb upstream 0.5kb upstream 500 false Chr3: 17673531-17674030 Arabidopsis thaliana
AT3G47890 0.5kb downstream 0.5kb downstream 7104 true Chr3: 17666427-17673530 Arabidopsis thaliana
AT3G47890 0.5kb downstream 0.5kb downstream 500 false Chr3: 17666427-17666926 Arabidopsis thaliana
AT3G47890 1.0kb upstream 1.0kb upstream 7604 true Chr3: 17666927-17674530 Arabidopsis thaliana
AT3G47890 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17673531-17674530 Arabidopsis thaliana
AT3G47890 1.0kb downstream 1.0kb downstream 7604 true Chr3: 17665927-17673530 Arabidopsis thaliana
AT3G47890 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17665927-17666926 Arabidopsis thaliana
AT3G47890 2.0kb upstream 2.0kb upstream 8604 true Chr3: 17666927-17675530 Arabidopsis thaliana
AT3G47890 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17673531-17675530 Arabidopsis thaliana
AT3G47890 2.0kb downstream 2.0kb downstream 8604 true Chr3: 17664927-17673530 Arabidopsis thaliana
AT3G47890 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17664927-17666926 Arabidopsis thaliana
AT3G47890 5.0kb upstream 5.0kb upstream 11604 true Chr3: 17666927-17678530 Arabidopsis thaliana
AT3G47890 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17673531-17678530 Arabidopsis thaliana
AT3G47890 5.0kb downstream 5.0kb downstream 11604 true Chr3: 17661927-17673530 Arabidopsis thaliana
AT3G47890 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17661927-17666926 Arabidopsis thaliana
AT3G47890 10.0kb upstream 10.0kb upstream 16604 true Chr3: 17666927-17683530 Arabidopsis thaliana
AT3G47890 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17673531-17683530 Arabidopsis thaliana
AT3G47890 10.0kb downstream 10.0kb downstream 16604 true Chr3: 17656927-17673530 Arabidopsis thaliana
AT3G47890 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17656927-17666926 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338582 5261 Brassicaceae View MSA
123841591 5264 Brassicales-Malvales View MSA
124340866 5266 SBM View MSA
124252136 5268 Malvidae View MSA
124072872 5270 Rosid View MSA
123749894 5271 Pentapetalae View MSA
122797305 5272 Eudicot View MSA
122047573 5273 Angiosperm View MSA
121346745 5274 Embryophyte View MSA
123380438 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.177        
cufflinks 11.072       High
cufflinks 7.788        
cufflinks 11.158       High
cufflinks 7.39       Low
cufflinks 10.086        

0 Strain