Gene : AT3G47680 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11260//PTHR11260:SF120 - GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING // SUBFAMILY NOT NAMED Genomic Order:  3753
Name:  ? AT3G47680 Secondary Identifier:  ? PAC:19664657
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6842 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G47680 0.5kb upstream 0.5kb upstream 2680 true Chr3: 17577398-17580077 Arabidopsis thaliana
AT3G47680 0.5kb upstream 0.5kb upstream 500 false Chr3: 17579578-17580077 Arabidopsis thaliana
AT3G47680 0.5kb downstream 0.5kb downstream 2680 true Chr3: 17576898-17579577 Arabidopsis thaliana
AT3G47680 0.5kb downstream 0.5kb downstream 500 false Chr3: 17576898-17577397 Arabidopsis thaliana
AT3G47680 1.0kb upstream 1.0kb upstream 3180 true Chr3: 17577398-17580577 Arabidopsis thaliana
AT3G47680 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17579578-17580577 Arabidopsis thaliana
AT3G47680 1.0kb downstream 1.0kb downstream 3180 true Chr3: 17576398-17579577 Arabidopsis thaliana
AT3G47680 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17576398-17577397 Arabidopsis thaliana
AT3G47680 2.0kb upstream 2.0kb upstream 4180 true Chr3: 17577398-17581577 Arabidopsis thaliana
AT3G47680 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17579578-17581577 Arabidopsis thaliana
AT3G47680 2.0kb downstream 2.0kb downstream 4180 true Chr3: 17575398-17579577 Arabidopsis thaliana
AT3G47680 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17575398-17577397 Arabidopsis thaliana
AT3G47680 5.0kb upstream 5.0kb upstream 7180 true Chr3: 17577398-17584577 Arabidopsis thaliana
AT3G47680 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17579578-17584577 Arabidopsis thaliana
AT3G47680 5.0kb downstream 5.0kb downstream 7180 true Chr3: 17572398-17579577 Arabidopsis thaliana
AT3G47680 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17572398-17577397 Arabidopsis thaliana
AT3G47680 10.0kb upstream 10.0kb upstream 12180 true Chr3: 17577398-17589577 Arabidopsis thaliana
AT3G47680 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17579578-17589577 Arabidopsis thaliana
AT3G47680 10.0kb downstream 10.0kb downstream 12180 true Chr3: 17567398-17579577 Arabidopsis thaliana
AT3G47680 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17567398-17577397 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029867 5273 Angiosperm View MSA
122378156 5261 Brassicaceae View MSA
123801764 5264 Brassicales-Malvales View MSA
124350228 5266 SBM View MSA
124181074 5268 Malvidae View MSA
124039955 5270 Rosid View MSA
123752464 5271 Pentapetalae View MSA
122797800 5272 Eudicot View MSA
121351541 5274 Embryophyte View MSA
123382215 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.997        
cufflinks 38.769     High High
cufflinks 16.316        
cufflinks 35.588     High  
cufflinks 15.844        
cufflinks 28.331        

0 Strain