Gene : PYE A. thaliana TAIR10
Primary Identifier:  ? AT3G47640 Defline:  (1 of 1) PTHR23042//PTHR23042:SF51 - CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS // TRANSCRIPTION FACTOR BHLH47
Genomic Order:  3748 Name:  ? AT3G47640
Secondary Identifier:  ? PAC:19658982
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G47640 0.5kb upstream 0.5kb upstream 2760 true Chr3: 17566626-17569385 Arabidopsis thaliana
AT3G47640 0.5kb upstream 0.5kb upstream 500 false Chr3: 17566626-17567125 Arabidopsis thaliana
AT3G47640 0.5kb downstream 0.5kb downstream 2760 true Chr3: 17567126-17569885 Arabidopsis thaliana
AT3G47640 0.5kb downstream 0.5kb downstream 500 false Chr3: 17569386-17569885 Arabidopsis thaliana
AT3G47640 1.0kb upstream 1.0kb upstream 3260 true Chr3: 17566126-17569385 Arabidopsis thaliana
AT3G47640 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17566126-17567125 Arabidopsis thaliana
AT3G47640 1.0kb downstream 1.0kb downstream 3260 true Chr3: 17567126-17570385 Arabidopsis thaliana
AT3G47640 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17569386-17570385 Arabidopsis thaliana
AT3G47640 2.0kb upstream 2.0kb upstream 4260 true Chr3: 17565126-17569385 Arabidopsis thaliana
AT3G47640 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17565126-17567125 Arabidopsis thaliana
AT3G47640 2.0kb downstream 2.0kb downstream 4260 true Chr3: 17567126-17571385 Arabidopsis thaliana
AT3G47640 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17569386-17571385 Arabidopsis thaliana
AT3G47640 5.0kb upstream 5.0kb upstream 7260 true Chr3: 17562126-17569385 Arabidopsis thaliana
AT3G47640 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17562126-17567125 Arabidopsis thaliana
AT3G47640 5.0kb downstream 5.0kb downstream 7260 true Chr3: 17567126-17574385 Arabidopsis thaliana
AT3G47640 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17569386-17574385 Arabidopsis thaliana
AT3G47640 10.0kb upstream 10.0kb upstream 12260 true Chr3: 17557126-17569385 Arabidopsis thaliana
AT3G47640 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17557126-17567125 Arabidopsis thaliana
AT3G47640 10.0kb downstream 10.0kb downstream 12260 true Chr3: 17567126-17579385 Arabidopsis thaliana
AT3G47640 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17569386-17579385 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378387 5261 Brassicaceae View MSA
123831438 5264 Brassicales-Malvales View MSA
124338458 5266 SBM View MSA
124236941 5268 Malvidae View MSA
124071212 5270 Rosid View MSA
123743361 5271 Pentapetalae View MSA
122787264 5272 Eudicot View MSA
122043647 5273 Angiosperm View MSA
121351586 5274 Embryophyte View MSA
123427389 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.33        
cufflinks 7.454       High
cufflinks 1.005        
cufflinks 4.53        
cufflinks 0.7       Low
cufflinks 4.513        

0 Strain