Gene : ACT12 A. thaliana TAIR10
Primary Identifier:  ? AT3G46520 Defline:  (1 of 3) PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED
Genomic Order:  3636 Name:  ? AT3G46520
Secondary Identifier:  ? PAC:19661350
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G46520 0.5kb upstream 0.5kb upstream 2448 true Chr3: 17127763-17130210 Arabidopsis thaliana
AT3G46520 0.5kb upstream 0.5kb upstream 500 false Chr3: 17127763-17128262 Arabidopsis thaliana
AT3G46520 0.5kb downstream 0.5kb downstream 2448 true Chr3: 17128263-17130710 Arabidopsis thaliana
AT3G46520 0.5kb downstream 0.5kb downstream 500 false Chr3: 17130211-17130710 Arabidopsis thaliana
AT3G46520 1.0kb upstream 1.0kb upstream 2948 true Chr3: 17127263-17130210 Arabidopsis thaliana
AT3G46520 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17127263-17128262 Arabidopsis thaliana
AT3G46520 1.0kb downstream 1.0kb downstream 2948 true Chr3: 17128263-17131210 Arabidopsis thaliana
AT3G46520 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17130211-17131210 Arabidopsis thaliana
AT3G46520 2.0kb upstream 2.0kb upstream 3948 true Chr3: 17126263-17130210 Arabidopsis thaliana
AT3G46520 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17126263-17128262 Arabidopsis thaliana
AT3G46520 2.0kb downstream 2.0kb downstream 3948 true Chr3: 17128263-17132210 Arabidopsis thaliana
AT3G46520 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17130211-17132210 Arabidopsis thaliana
AT3G46520 5.0kb upstream 5.0kb upstream 6948 true Chr3: 17123263-17130210 Arabidopsis thaliana
AT3G46520 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17123263-17128262 Arabidopsis thaliana
AT3G46520 5.0kb downstream 5.0kb downstream 6948 true Chr3: 17128263-17135210 Arabidopsis thaliana
AT3G46520 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17130211-17135210 Arabidopsis thaliana
AT3G46520 10.0kb upstream 10.0kb upstream 11948 true Chr3: 17118263-17130210 Arabidopsis thaliana
AT3G46520 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17118263-17128262 Arabidopsis thaliana
AT3G46520 10.0kb downstream 10.0kb downstream 11948 true Chr3: 17128263-17140210 Arabidopsis thaliana
AT3G46520 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17130211-17140210 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373377 5261 Brassicaceae View MSA
123800541 5264 Brassicales-Malvales View MSA
124297948 5266 SBM View MSA
124247835 5268 Malvidae View MSA
124074063 5270 Rosid View MSA
123752253 5271 Pentapetalae View MSA
122794505 5272 Eudicot View MSA
122049993 5273 Angiosperm View MSA
123429016 5275 Viridiplantae View MSA
121350794 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.067     Low High
cufflinks 0.023     Low  
cufflinks 0.016     Low  
cufflinks 0.008     Low Low
cufflinks 0.016     Low  
cufflinks 0.009     Low  

0 Strain