Gene : PUB13 A. thaliana TAIR10
Primary Identifier:  ? AT3G46510 Defline:  (1 of 1) PTHR23315//PTHR23315:SF69 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 12-RELATED
Genomic Order:  3635 Name:  ? AT3G46510
Secondary Identifier:  ? PAC:19661516
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G46510 0.5kb upstream 0.5kb upstream 3453 true Chr3: 17123739-17127191 Arabidopsis thaliana
AT3G46510 0.5kb upstream 0.5kb upstream 500 false Chr3: 17126692-17127191 Arabidopsis thaliana
AT3G46510 0.5kb downstream 0.5kb downstream 3453 true Chr3: 17123239-17126691 Arabidopsis thaliana
AT3G46510 0.5kb downstream 0.5kb downstream 500 false Chr3: 17123239-17123738 Arabidopsis thaliana
AT3G46510 1.0kb upstream 1.0kb upstream 3953 true Chr3: 17123739-17127691 Arabidopsis thaliana
AT3G46510 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17126692-17127691 Arabidopsis thaliana
AT3G46510 1.0kb downstream 1.0kb downstream 3953 true Chr3: 17122739-17126691 Arabidopsis thaliana
AT3G46510 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17122739-17123738 Arabidopsis thaliana
AT3G46510 2.0kb upstream 2.0kb upstream 4953 true Chr3: 17123739-17128691 Arabidopsis thaliana
AT3G46510 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17126692-17128691 Arabidopsis thaliana
AT3G46510 2.0kb downstream 2.0kb downstream 4953 true Chr3: 17121739-17126691 Arabidopsis thaliana
AT3G46510 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17121739-17123738 Arabidopsis thaliana
AT3G46510 5.0kb upstream 5.0kb upstream 7953 true Chr3: 17123739-17131691 Arabidopsis thaliana
AT3G46510 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17126692-17131691 Arabidopsis thaliana
AT3G46510 5.0kb downstream 5.0kb downstream 7953 true Chr3: 17118739-17126691 Arabidopsis thaliana
AT3G46510 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17118739-17123738 Arabidopsis thaliana
AT3G46510 10.0kb upstream 10.0kb upstream 12953 true Chr3: 17123739-17136691 Arabidopsis thaliana
AT3G46510 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17126692-17136691 Arabidopsis thaliana
AT3G46510 10.0kb downstream 10.0kb downstream 12953 true Chr3: 17113739-17126691 Arabidopsis thaliana
AT3G46510 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17113739-17123738 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027848 5273 Angiosperm View MSA
124063850 5270 Rosid View MSA
122365315 5261 Brassicaceae View MSA
123827412 5264 Brassicales-Malvales View MSA
124342810 5266 SBM View MSA
124240381 5268 Malvidae View MSA
123736546 5271 Pentapetalae View MSA
122787346 5272 Eudicot View MSA
121349135 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.085     High High
cufflinks 29.187     High  
cufflinks 21.115       Low
cufflinks 29.389        
cufflinks 24.724        
cufflinks 27.987        

0 Strain