Gene : AT3G46080 A. thaliana TAIR10
Defline:  (1 of 4) PTHR26374//PTHR26374:SF162 - FAMILY NOT NAMED // C2H2-TYPE ZINC FINGER FAMILY PROTEIN-RELATED Genomic Order:  3591
Name:  ? AT3G46080 Secondary Identifier:  ? PAC:19661689
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G46080 0.5kb upstream 0.5kb upstream 995 true Chr3: 16922753-16923747 Arabidopsis thaliana
AT3G46080 0.5kb upstream 0.5kb upstream 500 false Chr3: 16923248-16923747 Arabidopsis thaliana
AT3G46080 0.5kb downstream 0.5kb downstream 995 true Chr3: 16922253-16923247 Arabidopsis thaliana
AT3G46080 0.5kb downstream 0.5kb downstream 500 false Chr3: 16922253-16922752 Arabidopsis thaliana
AT3G46080 1.0kb upstream 1.0kb upstream 1495 true Chr3: 16922753-16924247 Arabidopsis thaliana
AT3G46080 1.0kb upstream 1.0kb upstream 1000 false Chr3: 16923248-16924247 Arabidopsis thaliana
AT3G46080 1.0kb downstream 1.0kb downstream 1495 true Chr3: 16921753-16923247 Arabidopsis thaliana
AT3G46080 1.0kb downstream 1.0kb downstream 1000 false Chr3: 16921753-16922752 Arabidopsis thaliana
AT3G46080 2.0kb upstream 2.0kb upstream 2495 true Chr3: 16922753-16925247 Arabidopsis thaliana
AT3G46080 2.0kb upstream 2.0kb upstream 2000 false Chr3: 16923248-16925247 Arabidopsis thaliana
AT3G46080 2.0kb downstream 2.0kb downstream 2495 true Chr3: 16920753-16923247 Arabidopsis thaliana
AT3G46080 2.0kb downstream 2.0kb downstream 2000 false Chr3: 16920753-16922752 Arabidopsis thaliana
AT3G46080 5.0kb upstream 5.0kb upstream 5495 true Chr3: 16922753-16928247 Arabidopsis thaliana
AT3G46080 5.0kb upstream 5.0kb upstream 5000 false Chr3: 16923248-16928247 Arabidopsis thaliana
AT3G46080 5.0kb downstream 5.0kb downstream 5495 true Chr3: 16917753-16923247 Arabidopsis thaliana
AT3G46080 5.0kb downstream 5.0kb downstream 5000 false Chr3: 16917753-16922752 Arabidopsis thaliana
AT3G46080 10.0kb upstream 10.0kb upstream 10495 true Chr3: 16922753-16933247 Arabidopsis thaliana
AT3G46080 10.0kb upstream 10.0kb upstream 10000 false Chr3: 16923248-16933247 Arabidopsis thaliana
AT3G46080 10.0kb downstream 10.0kb downstream 10495 true Chr3: 16912753-16923247 Arabidopsis thaliana
AT3G46080 10.0kb downstream 10.0kb downstream 10000 false Chr3: 16912753-16922752 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378755 5261 Brassicaceae View MSA
123801980 5264 Brassicales-Malvales View MSA
124299215 5266 SBM View MSA
124150688 5268 Malvidae View MSA
124071249 5270 Rosid View MSA
123747694 5271 Pentapetalae View MSA
122796352 5272 Eudicot View MSA
122051585 5273 Angiosperm View MSA
121348252 5274 Embryophyte View MSA
123380791 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.031        
cufflinks 80.915     High High
cufflinks 7.901       Low
cufflinks 56.039     High  
cufflinks 13.482        
cufflinks 49.331     High  

0 Strain