Gene : AP3 A. thaliana TAIR10
Primary Identifier:  ? AT3G54340 Defline:  (1 of 1) PTHR11945:SF219 - FLORAL HOMEOTIC PROTEIN APETALA 3
Genomic Order:  4472 Name:  ? AT3G54340
Secondary Identifier:  ? PAC:19659884
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54340 0.5kb upstream 0.5kb upstream 2498 true Chr3: 20119173-20121670 Arabidopsis thaliana
AT3G54340 0.5kb upstream 0.5kb upstream 500 false Chr3: 20121171-20121670 Arabidopsis thaliana
AT3G54340 0.5kb downstream 0.5kb downstream 2498 true Chr3: 20118673-20121170 Arabidopsis thaliana
AT3G54340 0.5kb downstream 0.5kb downstream 500 false Chr3: 20118673-20119172 Arabidopsis thaliana
AT3G54340 1.0kb upstream 1.0kb upstream 2998 true Chr3: 20119173-20122170 Arabidopsis thaliana
AT3G54340 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20121171-20122170 Arabidopsis thaliana
AT3G54340 1.0kb downstream 1.0kb downstream 2998 true Chr3: 20118173-20121170 Arabidopsis thaliana
AT3G54340 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20118173-20119172 Arabidopsis thaliana
AT3G54340 2.0kb upstream 2.0kb upstream 3998 true Chr3: 20119173-20123170 Arabidopsis thaliana
AT3G54340 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20121171-20123170 Arabidopsis thaliana
AT3G54340 2.0kb downstream 2.0kb downstream 3998 true Chr3: 20117173-20121170 Arabidopsis thaliana
AT3G54340 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20117173-20119172 Arabidopsis thaliana
AT3G54340 5.0kb upstream 5.0kb upstream 6998 true Chr3: 20119173-20126170 Arabidopsis thaliana
AT3G54340 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20121171-20126170 Arabidopsis thaliana
AT3G54340 5.0kb downstream 5.0kb downstream 6998 true Chr3: 20114173-20121170 Arabidopsis thaliana
AT3G54340 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20114173-20119172 Arabidopsis thaliana
AT3G54340 10.0kb upstream 10.0kb upstream 11998 true Chr3: 20119173-20131170 Arabidopsis thaliana
AT3G54340 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20121171-20131170 Arabidopsis thaliana
AT3G54340 10.0kb downstream 10.0kb downstream 11998 true Chr3: 20109173-20121170 Arabidopsis thaliana
AT3G54340 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20109173-20119172 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362490 5261 Brassicaceae View MSA
123833359 5264 Brassicales-Malvales View MSA
124348542 5266 SBM View MSA
124247022 5268 Malvidae View MSA
124071528 5270 Rosid View MSA
123747185 5271 Pentapetalae View MSA
122794431 5272 Eudicot View MSA
122047951 5273 Angiosperm View MSA
121310821 5274 Embryophyte View MSA
123348212 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.408       High
cufflinks 0.022     Low  
cufflinks 0.094     Low  
cufflinks 0.023     Low  
cufflinks 0.178     Low  
cufflinks 0.024     Low  

0 Strain